Bioinformatics Research and Applications

1. Diploid Alignments and Haplotyping

   • Veli Mäkinen, Daniel Valenzuela

   Pages 235-246

2. Structural Comparative Analysis of Ecto- NTPDase Models from S. Mansoni and H. Sapiens

   • Vinicius Schmitz Nunes, Eveline Gomes Vasconcelos, Priscila Faria-Pinto, Carlos Cristiano H. Borges, Priscila V. S. Z. Capriles

   Pages 247-259

3. Assessing the Robustness of Parsimonious Predictions for Gene Neighborhoods from Reconciled Phylogenies: Supplementary Material

   • Ashok Rajaraman, Cedric Chauve, Yann Ponty

   Pages 260-271

4. Sorting Signed Circular Permutations by Super Short Reversals

   • Gustavo Rodrigues Galvão, Christian Baudet, Zanoni Dias

   Pages 272-283

5. Multiple Alignment of Structures Using Center Of ProTeins

   • Kaushik Roy, Satish Chandra Panigrahi, Asish Mukhopadhyay

   Pages 284-296

6. NRRC: A Non-referential Reads Compression Algorithm

   • Subrata Saha, Sanguthevar Rajasekaran

   Pages 297-308

7. New Heuristics for Clustering Large Biological Networks

   • Md. Kishwar Shafin, Kazi Lutful Kabir, Iffatur Ridwan, Tasmiah Tamzid Anannya, Rashid Saadman Karim, Mohammad Mozammel Hoque et al.

   Pages 309-319

8. A Novel Algorithm for Glycan de novo Sequencing Using Tandem Mass Spectrometry

   • Weiping Sun, Gilles A. Lajoie, Bin Ma, Kaizhong Zhang

   Pages 320-330

9. Community Detection-Based Feature Construction for Protein Sequence Classification

   • Karthik Tangirala, Nic Herndon, Doina Caragea

   Pages 331-342

10. Curvilinear Triangular Discretization of Biomedical Images

    • Jing Xu, Andrey N. Chernikov

    Pages 343-354

11. The Role of miRNAs in Cisplatin-Resistant HeLa Cells

    • Yubo Yang, Cuihong Dai, Zhipeng Cai, Aiju Hou, Dayou Cheng, Dechang Xu

    Pages 355-365

12. DNA AS X: An Information-Coding-Based Model to Improve the Sensitivity in Comparative Gene Analysis

    • Ning Yu, Xuan Guo, Feng Gu, Yi Pan

    Pages 366-377

13. A Distance-Based Method for Inferring Phylogenetic Networks in the Presence of Incomplete Lineage Sorting

    • Yun Yu, Luay Nakhleh

    Pages 378-389

14. Predicting Protein Functions Based on Dynamic Protein Interaction Networks

    • Bihai Zhao, Jianxin Wang, Fang-Xiang Wu, Yi Pan

    Pages 390-401

15. An Iterative Approach for Phylogenetic Analysis of Tumor Progression Using FISH Copy Number

    • Jun Zhou, Yu Lin, William Hoskins, Jijun Tang

    Pages 402-412

16. Back Matter

    Pages 413-445

    PDF

This book constitutes the refereed proceedings of the 11th International Symposium on Bioinformatics Research and Applications, ISBRA 2015, held in Norfolk, VA, USA, in June 2015. The 34 revised full papers and 14 two-page papers included in this volume were carefully reviewed and selected from 98 submissions. The papers cover a wide range of topics in bioinformatics and computational biology and their applications.

• RNA
• bioinformatics
• biological networks
• biomedical image processing
• cancer genomics
• computational biology
• data mining
• dynamic programming
• functional genomics
• gene prediction
• graph algorithms
• interaction networks
• machine learning
• miRNA
• pathway
• protein database
• protein structure prediction
• sequence analysis
• supervised learning
• transformation

• Georgia State University, Atlanta, USA

  Robert Harrison

• Old Dominion University, Norfolk, USA

  Yaohang Li

• University of Connecticut, Storrs, USA

  Ion Măndoiu

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