Bioinformatics Research and Applications

11th International Symposium, ISBRA 2015 Norfolk, USA, June 7-10, 2015 Proceedings

  • Robert Harrison
  • Yaohang Li
  • Ion Măndoiu
Conference proceedings ISBRA 2015

DOI: 10.1007/978-3-319-19048-8

Part of the Lecture Notes in Computer Science book series (LNCS, volume 9096)

Table of contents (34 papers)

  1. Front Matter
    Pages 1-19
  2. Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome
    Emi Ayada, Atsushi Niida, Takanori Hasegawa, Satoru Miyano, Seiya Imoto
    Pages 12-23
  3. A Filter-Based Approach for Approximate Circular Pattern Matching
    Md. Aashikur Rahman Azim, Costas S. Iliopoulos, M. Sohel Rahman, M. Samiruzzaman
    Pages 24-35
  4. Fast Algorithms for Inferring Gene-Species Associations
    Arkadiusz Betkier, Paweł Szczęsny, Paweł Górecki
    Pages 36-47
  5. Couplet Supertree Based Species Tree Estimation
    Sourya Bhattacharyya, Jayanta Mukhopadhyay
    Pages 48-59
  6. Managing Reproducible Computational Experiments with Curated Proteins in KINARI-2
    John C. Bowers, Rose Tharail John, Ileana Streinu
    Pages 72-83
  7. Protein Crystallization Screening Using Associative Experimental Design
    İmren Dinç, Marc L. Pusey, Ramazan S. Aygün
    Pages 84-95
  8. DAM: A Bayesian Method for Detecting Genome-wide Associations on Multiple Diseases
    Xuan Guo, Jing Zhang, Zhipeng Cai, Ding-Zhu Du, Yi Pan
    Pages 96-107
  9. A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana
    Qiwen Hu, Catharina Merchante, Anna N. Stepanova, Jose M. Alonso, Steffen Heber
    Pages 138-149
  10. On the Near-Linear Correlation of the Eigenvalues Across BLOSUM Matrices
    Jin Li, Yen Kaow Ng, Xingwu Liu, Shuai Cheng Li
    Pages 199-210
  11. Predicting RNA Secondary Structures: One-grammar-fits-all Solution
    Menglu Li, Micheal Cheng, Yongtao Ye, Wk Hon, Hf Ting, Tw Lam et al.
    Pages 211-222
  12. An Approach for Matching Mixture MS/MS Spectra with a Pair of Peptide Sequences in a Protein Database
    Yi Liu, Weiping Sun, Gilles Lajoie, Bin Ma, Kaizhong Zhang
    Pages 223-234

About these proceedings

Introduction

This book constitutes the refereed proceedings of the 11th International Symposium on Bioinformatics Research and Applications, ISBRA 2015, held in Norfolk, VA, USA, in June 2015. The 34 revised full papers and 14 two-page papers included in this volume were carefully reviewed and selected from 98 submissions. The papers cover a wide range of topics in bioinformatics and computational biology and their applications.

Keywords

RNA bioinformatics biological networks biomedical image processing cancer genomics computational biology data mining dynamic programming functional genomics gene prediction graph algorithms interaction networks machine learning miRNA pathway protein database protein structure prediction sequence analysis supervised learning transformation

Editors and affiliations

  • Robert Harrison
    • 1
  • Yaohang Li
    • 2
  • Ion Măndoiu
    • 3
  1. 1.Georgia State UniversityAtlantaUSA
  2. 2.Old Dominion UniversityNorfolkUSA
  3. 3.University of ConnecticutStorrsUSA

Bibliographic information

  • Copyright Information Springer International Publishing Switzerland 2015
  • Publisher Name Springer, Cham
  • eBook Packages Computer Science
  • Print ISBN 978-3-319-19047-1
  • Online ISBN 978-3-319-19048-8
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349