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  • © 2013

Imaging Gene Expression

Methods and Protocols

Editors:

  • Includes cutting-edge methods and protocols exploring the imaging of cellular aspects, tissues, and complete living organisms
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 1042)

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Table of contents (23 protocols)

  1. Front Matter

    Pages i-xiii
  2. Imaging Gene Expression and RNA Dynamics in Cells and Organisms

    1. Front Matter

      Pages 1-1
    2. Measuring Transcription Dynamics in Living Cells Using Fluctuation Analysis

      • Matthew L. Ferguson, Daniel R. Larson
      Pages 47-60
    3. Nuclear Trafficking and Export of Single, Native mRNPs in Chironomus tentans Salivary Gland Cells

      • Tim P. Kaminski, Jan-Hendrik Spille, Claudio Nietzel, Jan Peter Siebrasse, Ulrich Kubitscheck
      Pages 73-85
    4. Single mRNP Tracking in Living Mammalian Cells

      • Alon Kalo, Pinhas Kafri, Yaron Shav-Tal
      Pages 87-99
    5. Imaging Nascent RNA Dynamics in Dictyostelium

      • Jonathan R. Chubb, Michelle Stevense, Danielle Cannon, Tetsuya Muramoto, Adam M. Corrigan
      Pages 101-113
  3. Imaging the Genome and Chromatin Dynamics

    1. Front Matter

      Pages 115-115
    2. Monitoring Dynamic Binding of Chromatin Proteins In Vivo by Single-Molecule Tracking

      • Davide Mazza, Sourav Ganguly, James G. McNally
      Pages 117-137
    3. Single-Particle Tracking for Studying the Dynamic Properties of Genomic Regions in Live Cells

      • Irena Bronshtein Berger, Eldad Kepten, Yuval Garini
      Pages 139-151
    4. Microscopic Analysis of Chromatin Localization and Dynamics in C. elegans

      • Christian Lanctôt, Peter Meister
      Pages 153-172
    5. Measuring the Dynamics of Chromatin Proteins During Differentiation

      • Arigela Harikumar, Eran Meshorer
      Pages 173-180
    6. Electron Spectroscopic Tomography of Specific Chromatin Domains

      • Liron Even-Faitelson, Eden Fussner, Ren Li, Mike Strauss, David P. Bazett-Jones
      Pages 181-195
    7. BAC Manipulations for Making BAC Transgene Arrays

      • Nimish Khanna, Qian Bian, Matt Plutz, Andrew S. Belmont
      Pages 197-210
  4. Imaging Nuclear Processes and Sub-nuclear Structures

    1. Front Matter

      Pages 211-211
    2. Spatiotemporal Visualization of DNA Replication Dynamics

      • Marius Reinhart, Corella S. Casas-Delucchi, M. Cristina Cardoso
      Pages 213-225
    3. The Dynamics of DNA Damage Repair and Transcription

      • Niraj M. Shanbhag, Roger A. Greenberg
      Pages 227-235

About this book

As imaging technologies and approaches have evolved, the scope of certain imaging techniques has moved far beyond the production of purely illustrative images or appealing time-lapse movies to providing the scientist with a rich range of ways to measure and quantify the biological process and outcome of gene expression.  In Imaging Gene Expression: Methods and Protocols, expert authors offer up-to-date approaches and protocols that scientists in the field have developed, which would benefit the broader scientific community. Divided in three convenient parts, this detailed book covers the output of a gene, namely the RNA molecules that are transcribed from the gene and the way by which these molecules can be tracked or quantified in fixed or living cells, protocols that focus on the gene, DNA, or chromatin, as well as a variety of ways by which nuclear processes intertwined with gene expression can be followed and quantified in living cells as well as approaches for studying several sub-nuclear structures found in eukaryotic cells.  Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective subjects, lists of materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

 

Authoritative and up-to-date, Imaging Gene Expression: Methods and Protocols will serve researchers working toward imaging in the context of complete organisms.

Editors and Affiliations

  • Bar-Ilan University Inst. of Nanotech & Advanced Materials, Ramat Gan, Israel

    Yaron Shav-Tal

Bibliographic Information

  • Book Title: Imaging Gene Expression

  • Book Subtitle: Methods and Protocols

  • Editors: Yaron Shav-Tal

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-62703-526-2

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media, LLC 2013

  • Hardcover ISBN: 978-1-62703-525-5Published: 27 August 2013

  • Softcover ISBN: 978-1-4939-6312-6Published: 30 April 2017

  • eBook ISBN: 978-1-62703-526-2Published: 27 August 2013

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XIII, 368

  • Number of Illustrations: 18 b/w illustrations, 36 illustrations in colour

  • Topics: Imaging / Radiology, Gene Expression

Buy it now

Buying options

eBook USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 139.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access