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  • Book
  • © 2017

Genotyping

Methods and Protocols

  • Includes cutting-edge methods and protocols
  • Provides step-by-step detail essential for reproducible results
  • Contains key notes and implementation advice from the experts
  • Includes supplementary material: sn.pub/extras

Part of the book series: Methods in Molecular Biology (MIMB, volume 1492)

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Table of contents (17 protocols)

  1. Front Matter

    Pages i-x
  2. High-Throughput Genotyping with TaqMan Allelic Discrimination and Allele-Specific Genotyping Assays

    • Angelika Heissl, Barbara Arbeithuber, Irene Tiemann-Boege
    Pages 29-57
  3. In Situ Single-Molecule RNA Genotyping Using Padlock Probes and Rolling Circle Amplification

    • Tomasz Krzywkowski, Thomas Hauling, Mats Nilsson
    Pages 59-76
  4. The MassARRAY® System for Targeted SNP Genotyping

    • Justine A. Ellis, Benjamin Ong
    Pages 77-94
  5. Targeted Capture and High-Throughput Sequencing Using Molecular Inversion Probes (MIPs)

    • Stuart Cantsilieris, Holly A. Stessman, Jay Shendure, Evan E. Eichler
    Pages 95-106
  6. Analysis of Multiallelic CNVs by Emulsion Haplotype Fusion PCR

    • Jess Tyson, John A. L. Armour
    Pages 155-165
  7. Quantitative DNA Analysis Using Droplet Digital PCR

    • Rolf H. A. M Vossen, Stefan J. White
    Pages 167-177
  8. Full-Length Mitochondrial-DNA Sequencing on the PacBio RSII

    • Rolf H. A. M. Vossen, Henk P. J. Buermans
    Pages 179-184
  9. Targeted Locus Amplification and Next-Generation Sequencing

    • Quint P. Hottentot, M. van Min, E. Splinter, Stefan J. White
    Pages 185-196
  10. Rapid SNP Detection and Genotyping of Bacterial Pathogens by Pyrosequencing

    • Kingsley K. Amoako, Matthew C. Thomas, Timothy W. Janzen, Noriko Goji
    Pages 203-220
  11. Methods for Genotyping-by-Sequencing

    • Beth A. Rowan, Danelle K. Seymour, Eunyoung Chae, Derek S. Lundberg, Detlef Weigel
    Pages 221-242
  12. Describing Sequence Variants Using HGVS Nomenclature

    • Johan T. den Dunnen
    Pages 243-251
  13. Back Matter

    Pages 253-254

About this book

This volume explores a broad range of different genotyping techniques. Genotyping: Methods and Protocols consists of chapters that cover numerous topics such as: an overview of multiplexed microsatellite analysis; High Resolution Melt analysis and TaqMan-based assays; in situ analysis of variants in single RNA molecules; the MassARRAY system and Molecular Inversion Probes; Pulsed Field Gel Electrophoresis, Paralogue Ratio Test, and Multiplex Ligation-Dependent Probe Amplification; long-range PCR combined with PacBio sequencing; Targeted Locus Amplification; Multilocus Sequence Typing and rapid SNP detection with pyrosequencing; and genotyping-by-sequencing for plant analysis. Finally, the volume concludes with a summary of pertinent points to describe genetic variation. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step,readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Thorough and practical, Genotyping: Methods and Protocols is a valuable resource for anyone interested in learning more about the diverse field of genotyping.

Editors and Affiliations

  • Leiden Genome Technology Center Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands

    Stefan J. White

  • Department of Genome Sciences, University of Washington School of Medicine, Seattle, USA

    Stuart Cantsilieris

Bibliographic Information

  • Book Title: Genotyping

  • Book Subtitle: Methods and Protocols

  • Editors: Stefan J. White, Stuart Cantsilieris

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-4939-6442-0

  • Publisher: Humana New York, NY

  • eBook Packages: Springer Protocols

  • Copyright Information: Springer Science+Business Media New York 2017

  • Hardcover ISBN: 978-1-4939-6440-6Published: 08 November 2016

  • Softcover ISBN: 978-1-4939-8201-1Published: 08 June 2018

  • eBook ISBN: 978-1-4939-6442-0Published: 07 November 2016

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: X, 254

  • Number of Illustrations: 10 b/w illustrations, 55 illustrations in colour

  • Topics: Human Genetics

Buy it now

Buying options

eBook USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 119.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 159.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access