The Analysis of Gene Expression Data

Methods and Software

ISBN: 978-0-387-95577-3 (Print) 978-0-387-21679-9 (Online)

Table of contents (19 chapters)

  1. Front Matter

    Pages i-xix

  2. No Access

    Book Chapter

    Pages 1-45

    The Analysis of Gene Expression Data: An Overview of Methods and Software

  3. No Access

    Book Chapter

    Pages 46-72

    Visualization and Annotation of Genomic Experiments

  4. No Access

    Book Chapter

    Pages 73-101

    Bioconductor R Packages for Exploratory Analysis and Normalization of cDNA Microarray Data

  5. No Access

    Book Chapter

    Pages 102-119

    An R Package for Analyses of Affymetrix Oligonucleotide Arrays

  6. No Access

    Book Chapter

    Pages 120-141

    DNA-Chip Analyzer (dChip)

  7. No Access

    Book Chapter

    Pages 142-162

    Expression Profiler

  8. No Access

    Book Chapter

    Pages 163-184

    An S-PLUS Library for the Analysis and Visualization of Differential Expression

  9. No Access

    Book Chapter

    Pages 185-209

    Dragon and Dragon View: Methods for the Annotation, Analysis, and Visualization of Large-Scale Gene Expression Data

  10. No Access

    Book Chapter

    Pages 210-228

    Snomad: Biologist-Friendly Web Tools for the Standardization and NOrmalization of Microarray Data

  11. No Access

    Book Chapter

    Pages 229-253

    Microarray Analysis Using the MicroArray Explorer

  12. No Access

    Book Chapter

    Pages 254-271

    Parametric Empirical Bayes Methods for Microarrays

  13. No Access

    Book Chapter

    Pages 272-290

    SAM Thresholding and False Discovery Rates for Detecting Differential Gene Expression in DNA Microarrays

  14. No Access

    Book Chapter

    Pages 291-312

    Adaptive Gene Picking with Microarray Data: Detecting Important Low Abundance Signals

  15. No Access

    Book Chapter

    Pages 313-341

    MAANOVA: A Software Package for the Analysis of Spotted cDNA Microarray Experiments

  16. No Access

    Book Chapter

    Pages 342-361

    GeneClust

  17. No Access

    Book Chapter

    Pages 362-387

    POE: Statistical Methods for Qualitative Analysis of Gene Expression

  18. No Access

    Book Chapter

    Pages 388-408

    Bayesian Decomposition

  19. No Access

    Book Chapter

    Pages 409-427

    Bayesian Clustering of Gene Expression Dynamics

  20. No Access

    Book Chapter

    Pages 428-446

    Relevance Networks: A First Step Toward Finding Genetic Regulatory Networks Within Microarray Data

  21. Back Matter

    Pages 447-455