Data Integration in the Life Sciences

First International Workshop, DILS 2004, Leipzig, Germany, March 25-26, 2004. Proceedings

Editors:

ISBN: 978-3-540-21300-0 (Print) 978-3-540-24745-6 (Online)

Table of contents (15 chapters)

  1. Front Matter

    Pages -

  2. Scientific and Clinical Workflows

    1. No Access

      Book Chapter

      Pages 1-16

      An Ontology-Driven Framework for Data Transformation in Scientific Workflows

    2. No Access

      Book Chapter

      Pages 17-30

      PROVA: Rule-Based Java-Scripting for a Bioinformatics Semantic Web

    3. No Access

      Book Chapter

      Pages 31-46

      Process Based Data Logistics: a Solution for Clinical Integration Problems

  3. Ontologies and Taxonomies

    1. No Access

      Book Chapter

      Pages 47-62

      Domain-Specific Concepts and Ontological Reduction within a Data Dictionary Framework

    2. No Access

      Book Chapter

      Pages 63-78

      A Universal Character Model and Ontology of Defined Terms for Taxonomic Description

    3. No Access

      Book Chapter

      Pages 79-94

      On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology

  4. Indexing and Clustering

    1. No Access

      Book Chapter

      Pages 95-109

      Index-Driven XML Data Integration to Support Functional Genomics

    2. No Access

      Book Chapter

      Pages 110-123

      Heterogeneous Data Integration with the Consensus Clustering Formalism

  5. Integration Tools and Systems

    1. No Access

      Book Chapter

      Pages 124-139

      LinkSuiteTM: Formally Robust Ontology-Based Data and Information Integration

    2. No Access

      Book Chapter

      Pages 140-155

      BioDataServer: an Applied Molecular Biological Data Integration Service

    3. No Access

      Book Chapter

      Pages 156-171

      Columba: Multidimensional Data Integration of Protein Annotations

  6. Integration Techniques

    1. No Access

      Book Chapter

      Pages 172-186

      On the Integration of a Large Number of Life Science Web Databases

    2. No Access

      Book Chapter

      Pages 187-202

      Efficient Techniques to Explore and Rank Paths in Life Science Data Sources

    3. No Access

      Book Chapter

      Pages 203-211

      Links and Paths through Life Sciences Data Sources

    4. No Access

      Book Chapter

      Pages 212-219

      Pathway and Protein Interaction Data: from XML to FDM Database

  7. Back Matter

    Pages -