Computational Methods for SNPs and Haplotype Inference

DIMACS/RECOMB Satellite Workshop, Piscataway, NJ, USA, November 21-22, 2002. Revised Papers

Editors:

ISBN: 978-3-540-21249-2 (Print) 978-3-540-24719-7 (Online)

Table of contents (32 chapters)

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  1. Front Matter

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  2. Trisomic Phase Inference

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      Pages 1-8

      Trisomic Phase Inference

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      Pages 9-25

      An Overview of Combinatorial Methods for Haplotype Inference

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      Pages 26-47

      A Survey of Computational Methods for Determining Haplotypes

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      Pages 48-61

      Haplotype Inference and Its Application in Linkage Disequilibrium Mapping

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      Pages 62-73

      Inferring Piecewise Ancestral History from Haploid Sequences

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      Pages 74-83

      Haplotype Blocks in Small Populations

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      Pages 84-95

      Simulating a Coalescent Process with Recombination and Ascertainment

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      Pages 96-112

      Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data

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      Pages 113-123

      Parametric Bootstrap for Assessment of Goodness of Fit of Models for Block Haplotype Structure

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      Pages 124-130

      A Coalescent-Based Approach for Complex Disease Mapping

  3. Abstracts

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      Pages 131-131

      Haplotyping as Perfect Phylogeny

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      Pages 132-132

      Exhaustive Enumeration and Bayesian Phase Inference

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      Pages 133-133

      How Does Choice of Polymorphism Influence Estimation of LD and Mapping?

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      Pages 134-134

      Haplotype Inference in Random Population Samples

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      Pages 135-135

      Bayesian Methods for Statistical Reconstruction of Haplotypes

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      Pages 136-136

      Combinatorial Approaches to Haplotype Inference

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      Pages 137-137

      Large Scale Recovery of Haplotypes from Genotype Data Using Imperfect Phylogeny

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      Pages 138-138

      Haplotype Inference and Haplotype Information

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      Pages 139-139

      Multi-locus Linkage Disequilibrium and Haplotype-Based Tests of Association

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      Pages 140-140

      The Pattern of Polymorphism on Human Chromosome 21

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