2002

Data Analysis in Molecular Biology and Evolution

Authors:

ISBN: 978-0-7923-7500-5 (Print) 978-0-306-46893-3 (Online)

Table of contents (22 chapters)

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  1. Front Matter

    Pages i-xv

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    Book Chapter

    Pages 1-5

    Installation of DAMBE and a Quick Start

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    Book Chapter

    Pages 7-15

    File Conversion

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    Book Chapter

    Pages 17-24

    Processing GenBank Files

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    Book Chapter

    Pages 25-32

    Accessing GenBank or Other Networked Computers

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    Book Chapter

    Pages 33-39

    Pair-wise and Multiple Sequence Alignment

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    Book Chapter

    Pages 41-47

    Factors Affecting Nucleotide and Di-Nucleotide Frequencies

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    Book Chapter

    Pages 49-58

    Case Study 1

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    Book Chapter

    Pages 59-69

    Factors Affecting Codon Frequencies and Codon Usage Bias

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    Book Chapter

    Pages 71-90

    Case Study 2

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    Book Chapter

    Pages 91-105

    Case Study 3

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    Book Chapter

    Pages 107-114

    Evolution of Amino Acid Usage

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    Book Chapter

    Pages 115-123

    Pattern of Nucleotide Substitutions

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    Book Chapter

    Pages 125-130

    Preamble to the Pattern of Codon Substitution

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    Book Chapter

    Pages 131-146

    Factors Affecting Codon Substitutions

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    Book Chapter

    Pages 147-163

    Case Study 4

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    Book Chapter

    Pages 165-169

    Substitution Pattern in Amino Acid Sequences

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    Book Chapter

    Pages 171-178

    A Statistical Digression

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    Book Chapter

    Pages 179-196

    Theoretical Background of Genetic Distances

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    Book Chapter

    Pages 197-224

    Molecular Phylogenetics: Concepts and Practice

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    Book Chapter

    Pages 225-231

    Testing the Molecular Clock Hypothesis

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