Algorithms in Bioinformatics

4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004. Proceedings

Editors:

ISBN: 978-3-540-23018-2 (Print) 978-3-540-30219-3 (Online)

Table of contents (39 chapters)

previous Page of 2
  1. Front Matter

    Pages -

  2. Papers

    1. No Access

      Book Chapter

      Pages 1-13

      Reversing Gene Erosion – Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data

    2. No Access

      Book Chapter

      Pages 14-25

      Reconstructing Ancestral Gene Orders Using Conserved Intervals

    3. No Access

      Book Chapter

      Pages 26-37

      Sorting by Reversals with Common Intervals

    4. No Access

      Book Chapter

      Pages 38-49

      A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns

    5. No Access

      Book Chapter

      Pages 50-61

      A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals

    6. No Access

      Book Chapter

      Pages 62-73

      Algorithms for Finding Maximal-Scoring Segment Sets

    7. No Access

      Book Chapter

      Pages 74-86

      Gapped Local Similarity Search with Provable Guarantees

    8. No Access

      Book Chapter

      Pages 87-98

      Monotone Scoring of Patterns with Mismatches

    9. No Access

      Book Chapter

      Pages 99-110

      Suboptimal Local Alignments Across Multiple Scoring Schemes

    10. No Access

      Book Chapter

      Pages 111-122

      A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic

    11. No Access

      Book Chapter

      Pages 123-134

      Adding Hidden Nodes to Gene Networks

    12. No Access

      Book Chapter

      Pages 135-146

      Joint Analysis of DNA Copy Numbers and Gene Expression Levels

    13. No Access

      Book Chapter

      Pages 147-158

      Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting

    14. No Access

      Book Chapter

      Pages 159-169

      Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation

    15. No Access

      Book Chapter

      Pages 170-181

      Multiple Vector Seeds for Protein Alignment

    16. No Access

      Book Chapter

      Pages 182-193

      Solving the Protein Threading Problem by Lagrangian Relaxation

    17. No Access

      Book Chapter

      Pages 194-205

      Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations

    18. No Access

      Book Chapter

      Pages 206-217

      ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences

    19. No Access

      Book Chapter

      Pages 218-229

      Local Search Heuristic for Rigid Protein Docking

    20. No Access

      Book Chapter

      Pages 230-241

      Sequence Database Compression for Peptide Identification from Tandem Mass Spectra

previous Page of 2