Algorithms in Bioinformatics

14th International Workshop, WABI 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings

Editors:

ISBN: 978-3-662-44752-9 (Print) 978-3-662-44753-6 (Online)

Table of contents (27 chapters)

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  1. Front Matter

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    Book Chapter

    Pages 1-13

    QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering

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    Pages 14-25

    Improved Approximation for the Maximum Duo-Preservation String Mapping Problem

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    Pages 26-37

    A Faster 1.375-Approximation Algorithm for Sorting by Transpositions

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    Pages 38-51

    A Generalized Cost Model for DCJ-Indel Sorting

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    Pages 52-67

    Efficient Local Alignment Discovery amongst Noisy Long Reads

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    Pages 68-81

    Efficient Indexed Alignment of Contigs to Optical Maps

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    Pages 82-96

    Navigating in a Sea of Repeats in RNA-seq without Drowning

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    Pages 97-106

    Linearization of Median Genomes under DCJ

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    Pages 107-121

    An LP-Rounding Algorithm for Degenerate Primer Design

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    Pages 122-134

    GAML: Genome Assembly by Maximum Likelihood

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    Pages 135-147

    A Common Framework for Linear and Cyclic Multiple Sequence Alignment Problems

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    Pages 148-160

    Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences

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    Pages 161-173

    Estimating Evolutionary Distances from Spaced-Word Matches

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    Pages 174-186

    On the Family-Free DCJ Distance

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    Pages 187-203

    New Algorithms for Computing Phylogenetic Biodiversity

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    Pages 204-216

    The Divisible Load Balance Problem and Its Application to Phylogenetic Inference

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    Pages 217-231

    Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting Performance and Quality

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    Pages 232-246

    An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data

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    Pages 247-262

    Best-Fit in Linear Time for Non-generative Population Simulation

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    Book Chapter

    Pages 263-280

    GDNorm: An Improved Poisson Regression Model for Reducing Biases in Hi-C Data

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