Pattern Recognition in Bioinformatics

8th IAPR International Conference, PRIB 2013, Nice, France, June 17-20, 2013. Proceedings

  • Alioune Ngom
  • Enrico Formenti
  • Jin-Kao Hao
  • Xing-Ming Zhao
  • Twan van Laarhoven
Conference proceedings PRIB 2013

DOI: 10.1007/978-3-642-39159-0

Part of the Lecture Notes in Computer Science book series (LNCS, volume 7986)

Table of contents (25 papers)

  1. Front Matter
  2. Bio-molecular Networks and Pathway Analysis

    1. Inferring Gene Regulatory Networks from Time-Series Expressions Using Random Forests Ensemble
      D. A. K. Maduranga, Jie Zheng, Piyushkumar A. Mundra, Jagath C. Rajapakse
      Pages 13-22
    2. Local Topological Signatures for Network-Based Prediction of Biological Function
      Wynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder
      Pages 23-34
    3. Mutational Genomics for Cancer Pathway Discovery
      Jeroen de Ridder, Jaap Kool, Anthony G. Uren, Jan Bot, Johann de Jong, Alistair G. Rust et al.
      Pages 35-46
    4. Outlier Gene Set Analysis Combined with Top Scoring Pair Provides Robust Biomarkers of Pathway Activity
      Michael F. Ochs, Jason E. Farrar, Michael Considine, Yingying Wei, Soheil Meschinchi, Robert J. Arceci
      Pages 47-58
  3. Learning, Classification, and Clustering

  4. Data Mining and Knowledge Discovery

    1. A Local Structural Prediction Algorithm for RNA Triple Helix Structure
      Bay-Yuan Hsu, Thomas K. F. Wong, Wing-Kai Hon, Xinyi Liu, Tak-Wah Lam, Siu-Ming Yiu
      Pages 102-113
    2. Combining Protein Fragment Feature-Based Resampling and Local Optimisation
      Trent Higgs, Lukas Folkman, Bela Stantic
      Pages 114-125
    3. Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation
      Alexander V. Spirov, Carlos E. Vanario-Alonso, Ekaterina N. Spirova, David M. Holloway
      Pages 126-137
    4. Identifying Informative Genes for Prediction of Breast Cancer Subtypes
      Iman Rezaeian, Yifeng Li, Martin Crozier, Eran Andrechek, Alioune Ngom, Luis Rueda et al.
      Pages 138-148
    5. Predicting Therapeutic Targets with Integration of Heterogeneous Data Sources
      Yan-Fen Dai, Yin-Ying Wang, Xing-Ming Zhao
      Pages 149-158
    6. Using Predictive Models to Engineer Biology: A Case Study in Codon Optimization
      Alexey A. Gritsenko, Marcel J. T. Reinders, Dick de Ridder
      Pages 159-171
  5. Protein: Structure, Function, and Interaction

    1. Active Learning for Protein Function Prediction in Protein-Protein Interaction Networks
      Wei Xiong, Luyu Xie, Jihong Guan, Shuigeng Zhou
      Pages 172-183
    2. Conditional Random Fields for Protein Function Prediction
      Thies Gehrmann, Marco Loog, Marcel J. T. Reinders, Dick de Ridder
      Pages 184-195
    3. Enhancing Protein Fold Prediction Accuracy Using Evolutionary and Structural Features
      Abdollah Dehzangi, Kuldip Paliwal, James Lyons, Alok Sharma, Abdul Sattar
      Pages 196-207
    4. Exploring Potential Discriminatory Information Embedded in PSSM to Enhance Protein Structural Class Prediction Accuracy
      Abdollah Dehzangi, Kuldip Paliwal, James Lyons, Alok Sharma, Abdul Sattar
      Pages 208-219

About these proceedings

Introduction

This book constitutes the refereed proceedings of the 8th IAPR International Conference on Pattern Recognition in Bioinformatics, PRIB 2013, held in Nice, France, in June 2013. The 25 revised full papers presented were carefully reviewed and selected from 43 submissions. The papers are organized in topical sections on bio-molecular networks and pathway analysis; learning, classification, and clustering; data mining and knowledge discovery; protein: structure, function, and interaction; motifs, sites, and sequence analysis.

Keywords

computational biology gene regulatory networks information theory protein structure prediction support vector regression

Editors and affiliations

  • Alioune Ngom
    • 1
  • Enrico Formenti
    • 2
  • Jin-Kao Hao
    • 3
  • Xing-Ming Zhao
    • 4
  • Twan van Laarhoven
    • 5
  1. 1.School of Computer ScienceUniversity of WindsorWindsorCanada
  2. 2.I3S Research Lab.Nice Sophia Antipolis UniversitySophia Antipolis CedexFrance
  3. 3.LERIA - Faculté des SciencesUniversité d’AngersAngers Cedex 01France
  4. 4.School of Electronics and Information EngineeringTongji UniversityShanghaiChina
  5. 5.Institute for Computing and Information SciencesRadboud UniversityNijmegenThe Netherlands

Bibliographic information

  • Copyright Information Springer-Verlag Berlin Heidelberg 2013
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science
  • Print ISBN 978-3-642-39158-3
  • Online ISBN 978-3-642-39159-0
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349