Book Volume 7986 2013

Pattern Recognition in Bioinformatics

8th IAPR International Conference, PRIB 2013, Nice, France, June 17-20, 2013. Proceedings

ISBN: 978-3-642-39158-3 (Print) 978-3-642-39159-0 (Online)

Table of contents (25 chapters)

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  1. Front Matter

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  2. Bio-molecular Networks and Pathway Analysis

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      Pages 1-12

      A Fast Agglomerative Community Detection Method for Protein Complex Discovery in Protein Interaction Networks

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      Chapter

      Pages 13-22

      Inferring Gene Regulatory Networks from Time-Series Expressions Using Random Forests Ensemble

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      Chapter

      Pages 23-34

      Local Topological Signatures for Network-Based Prediction of Biological Function

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      Chapter

      Pages 35-46

      Mutational Genomics for Cancer Pathway Discovery

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      Chapter

      Pages 47-58

      Outlier Gene Set Analysis Combined with Top Scoring Pair Provides Robust Biomarkers of Pathway Activity

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      Chapter

      Pages 59-68

      Restricted Neighborhood Search Clustering Revisited: An Evolutionary Computation Perspective

  3. Learning, Classification, and Clustering

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      Pages 69-78

      Class Dependent Feature Weighting and K-Nearest Neighbor Classification

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      Pages 79-90

      Simultaneous Sample and Gene Selection Using T-score and Approximate Support Vectors

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      Chapter

      Pages 91-101

      Versatile Sparse Matrix Factorization and Its Applications in High-Dimensional Biological Data Analysis

  4. Data Mining and Knowledge Discovery

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      Chapter

      Pages 102-113

      A Local Structural Prediction Algorithm for RNA Triple Helix Structure

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      Chapter

      Pages 114-125

      Combining Protein Fragment Feature-Based Resampling and Local Optimisation

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      Chapter

      Pages 126-137

      Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation

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      Chapter

      Pages 138-148

      Identifying Informative Genes for Prediction of Breast Cancer Subtypes

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      Chapter

      Pages 149-158

      Predicting Therapeutic Targets with Integration of Heterogeneous Data Sources

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      Chapter

      Pages 159-171

      Using Predictive Models to Engineer Biology: A Case Study in Codon Optimization

  5. Protein: Structure, Function, and Interaction

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      Chapter

      Pages 172-183

      Active Learning for Protein Function Prediction in Protein-Protein Interaction Networks

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      Chapter

      Pages 184-195

      Conditional Random Fields for Protein Function Prediction

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      Chapter

      Pages 196-207

      Enhancing Protein Fold Prediction Accuracy Using Evolutionary and Structural Features

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      Chapter

      Pages 208-219

      Exploring Potential Discriminatory Information Embedded in PSSM to Enhance Protein Structural Class Prediction Accuracy

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      Chapter

      Pages 220-230

      Inferring the Association Network from p53 Sequence Alignment Using Granular Evaluations

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