Algorithms in Bioinformatics

12th International Workshop, WABI 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings

Editors:

ISBN: 978-3-642-33121-3 (Print) 978-3-642-33122-0 (Online)

Table of contents (35 chapters)

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  1. Front Matter

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    Pages 1-13

    Preserving Inversion Phylogeny Reconstruction

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    Pages 14-29

    Fast Phylogenetic Tree Reconstruction Using Locality-Sensitive Hashing

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    Pages 30-43

    Efficient Computation of Popular Phylogenetic Tree Measures

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    Pages 44-56

    SibJoin: A Fast Heuristic for Half-Sibling Reconstruction

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    Pages 57-68

    Reconstructing the Evolution of Molecular Interaction Networks under the DMC and Link Dynamics Models

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    Pages 69-80

    Estimating Population Size via Line Graph Reconstruction

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    Pages 81-92

    Extracting Conflict-Free Information from Multi-labeled Trees

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    Pages 93-105

    Reducing Problems in Unrooted Tree Compatibility to Restricted Triangulations of Intersection Graphs

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    Pages 106-122

    An Optimal Reconciliation Algorithm for Gene Trees with Polytomies

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    Pages 123-134

    Accounting for Gene Tree Uncertainties Improves Gene Trees and Reconciliation Inference

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    Pages 135-148

    RNA Tree Comparisons via Unrooted Unordered Alignments

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    Pages 149-164

    Tree Decomposition and Parameterized Algorithms for RNA Structure-Sequence Alignment Including Tertiary Interactions and Pseudoknots

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    Pages 165-177

    δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data

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    Pages 178-189

    CLIIQ: Accurate Comparative Detection and Quantification of Expressed Isoforms in a Population

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    Pages 190-200

    Improved Lower Bounds on the Compatibility of Quartets, Triplets, and Multi-state Characters

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    Pages 201-213

    Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches

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    Pages 214-224

    Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes

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    Pages 225-235

    Succinct de Bruijn Graphs

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    Pages 236-248

    Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom Filter

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    Pages 249-261

    From de Bruijn Graphs to Rectangle Graphs for Genome Assembly

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