Information Processign in Cells and Tissues

9th International Conference, IPCAT 2012, Cambridge, UK, March 31 – April 2, 2012. Proceedings

ISBN: 978-3-642-28791-6 (Print) 978-3-642-28792-3 (Online)

Table of contents (31 chapters)

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  1. Front Matter

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  2. Genetic and Epigenetic Networks

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      Pages 1-11

      Using Artificial Epigenetic Regulatory Networks to Control Complex Tasks within Chaotic Systems

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      Pages 12-16

      A Gene Regulatory Network Simulation of Heterosis

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      Pages 17-24

      Comparing Discrete and Piecewise Affine Differential Equation Models of Gene Regulatory Networks

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      Pages 25-30

      Automatic Inference of Regulatory and Dynamical Properties from Incomplete Gene Interaction and Expression Data

  3. Transcriptomics and Gene Regulation

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      Pages 31-34

      CRISPR Transcript Processing: An Unusual Mechanism for Rapid Production of Desired Molecules

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      Pages 35-37

      A Comprehensive Computational Model to Simulate Transcription Factor Binding in Prokaryotes

  4. Signalling Pathways and Responses

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      Pages 38-49

      Evolved Artificial Signalling Networks for the Control of a Conservative Complex Dynamical System

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      Pages 50-61

      The Effect of Membrane Receptor Clustering on Spatio-temporal Cell Signalling Dynamics

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      Pages 62-66

      Systems Biology Analysis of Kinase Inhibitor Protein Target Profiles in Leukemia Treatments

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      Pages 67-73

      Multispecific Interactions in Enzymatic Signalling Cascades

  5. Protein Structure and Metabolic Networks

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      Pages 74-81

      Role of Physico-chemical Properties of Amino Acids in Protein’s Structural Organization: A Network Perspective

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      Pages 82-89

      Tailored Strategies for the Analysis of Metabolomic Data

  6. Patterning and Rhythm Generation

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      Pages 90-98

      Evolving Locomotion for a Simulated 12-DOF Quadruped Robot

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      Pages 99-104

      Predictive Modelling of Stem Cell Differentiation and Apoptosis in C. elegans

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      Pages 105-116

      Criticality of Spatiotemporal Dynamics in Contact Mediated Pattern Formation

  7. Neural Modelling and Neural Networks

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      Pages 117-130

      The Vasopressin System – Asynchronous Burst Firing as a Signal Encoding Mechanism

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      Pages 131-135

      The Effective Calcium/Calmodulin Concentration Determines the Sensitivity of CaMKII to the Frequency of Calcium Oscillations

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      Pages 136-142

      The Effect of Different Types of Synaptic Plasticity on the Performance of Associative Memory Networks with Excitatory and Inhibitory Sub-populations

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      Pages 143-149

      Simulating Neurons in Reaction-Diffusion Chemistry

  8. Biomedical Modelling and Signal Processing

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      Pages 150-161

      Extending an Established Simulation: Exploration of the Possible Effects Using a Case Study in Experimental Autoimmune Encephalomyelitis

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