RNA 3D Structure Analysis and Prediction

Editors:

ISBN: 978-3-642-25739-1 (Print) 978-3-642-25740-7 (Online)

Table of contents (17 chapters)

  1. Front Matter

    Pages i-x

  2. No Access

    Book Chapter

    Pages 1-3

    Introduction

  3. No Access

    Book Chapter

    Pages 5-17

    Modeling RNA Molecules

  4. No Access

    Book Chapter

    Pages 19-41

    Methods for Predicting RNA Secondary Structure

  5. No Access

    Book Chapter

    Pages 43-65

    Why Can’t We Predict RNA Structure At Atomic Resolution?

  6. No Access

    Book Chapter

    Pages 67-90

    Template-Based and Template-Free Modeling of RNA 3D Structure: Inspirations from Protein Structure Modeling

  7. No Access

    Book Chapter

    Pages 91-117

    The RNA Folding Problems: Different Levels of sRNA Structure Prediction

  8. No Access

    Book Chapter

    Pages 119-142

    Computational Prediction and Modeling Aid in the Discovery of a Conformational Switch Controlling Replication and Translation in a Plus-Strand RNA Virus

  9. No Access

    Book Chapter

    Pages 143-166

    Methods for Building and Refining 3D Models of RNA

  10. No Access

    Book Chapter

    Pages 167-184

    Multiscale Modeling of RNA Structure and Dynamics

  11. No Access

    Book Chapter

    Pages 185-212

    Statistical Mechanical Modeling of RNA Folding: From Free Energy Landscape to Tertiary Structural Prediction

  12. No Access

    Book Chapter

    Pages 213-238

    Simulating Dynamics in RNA–Protein Complexes

  13. No Access

    Book Chapter

    Pages 239-279

    Quantum Chemical Studies of Recurrent Interactions in RNA 3D Motifs

  14. No Access

    Book Chapter

    Pages 281-298

    Nonredundant 3D Structure Datasets for RNA Knowledge Extraction and Benchmarking

  15. No Access

    Book Chapter

    Pages 299-318

    Ions in Molecular Dynamics Simulations of RNA Systems

  16. No Access

    Book Chapter

    Pages 319-334

    Modeling RNA Folding Pathways and Intermediates Using Time-Resolved Hydroxyl Radical Footprinting Data

  17. No Access

    Book Chapter

    Pages 335-359

    A Top-Down Approach to Determining Global RNA Structures in Solution Using NMR and Small-Angle X-ray Scattering Measurements

  18. No Access

    Book Chapter

    Pages 361-389

    RNA Structure Determination by Structural Probing and Mass Spectrometry: MS3D

  19. Back Matter

    Pages 391-400