Handbook of Statistical Bioinformatics

Editors:

ISBN: 978-3-642-16344-9 (Print) 978-3-642-16345-6 (Online)

Table of contents (27 chapters)

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  1. Front Matter

    Pages i-ix

  2. Sequence Analysis

    1. Front Matter

      Pages 1-1

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      Pages 3-30

      Accuracy Assessment of Consensus Sequence from Shotgun Sequencing

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      Pages 31-53

      Statistical and Computational Studies on Alternative Splicing

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      Pages 55-72

      Statistical Learning and Modeling of TF-DNA Binding

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      Pages 73-85

      Computational Promoter Prediction in a Vertebrate Genome

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      Pages 87-107

      Discovering Influential Variables: A General Computer Intensive Method for Common Genetic Disorders

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      Pages 109-134

      STORMSeq: A Method for Ranking Regulatory Sequences by Integrating Experimental Datasets with Diverse Computational Predictions

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      Pages 135-147

      Mixture Tree Construction and Its Applications

  3. Expression Data Analysis

    1. Front Matter

      Pages 149-149

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      Pages 151-169

      Experimental Designs and ANOVA for Microarray Data

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      Pages 171-192

      The MicroArray Quality Control (MAQC) Project and Cross-Platform Analysis of Microarray Data

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      Pages 193-223

      A Survey of Classification Techniques for Microarray Data Analysis

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      Pages 225-255

      Statistical Analysis of Single Nucleotide Polymorphism Microarrays in Cancer Studies

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      Pages 257-282

      Computational Analysis of ChIP-chip Data

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      Pages 283-298

      eQTL Mapping for Functional Classes of Saccharomyces cerevisiae Genes with Multivariate Sparse Partial Least Squares Regression

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      Pages 299-313

      Statistical Analysis of Time Course Microarray Data

  4. Systems Biology

    1. Front Matter

      Pages 315-315

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      Book Chapter

      Pages 317-334

      Kernel Methods in Bioinformatics

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      Pages 335-351

      Graph Classification Methods in Chemoinformatics

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      Pages 353-368

      Hidden Markov Random Field Models for Network-Based Analysis of Genomic Data

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      Pages 369-388

      Review of Weighted Gene Coexpression Network Analysis

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      Pages 389-404

      Liquid Association and Related Ideas in Quantifying Changes in Correlation

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      Book Chapter

      Pages 405-425

      Boolean Networks

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