Algorithms in Bioinformatics

9th International Workshop, WABI 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings

Editors:

ISBN: 978-3-642-04240-9 (Print) 978-3-642-04241-6 (Online)

Table of contents (34 chapters)

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  1. Front Matter

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    Pages 1-12

    Minimum Factorization Agreement of Spliced ESTs

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    Pages 13-24

    Annotating Fragmentation Patterns

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    Pages 25-36

    biRNA: Fast RNA-RNA Binding Sites Prediction

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    Pages 37-48

    Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks

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    Pages 49-61

    PMFastR: A New Approach to Multiple RNA Structure Alignment

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    Pages 62-72

    On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices

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    Pages 73-84

    Constructing Majority-Rule Supertrees

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    Pages 85-96

    SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are Easy

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    Pages 97-107

    A Simple, Practical and Complete \(O(\frac{n^3}{ \log n})\) -Time Algorithm for RNA Folding Using the Four-Russians Speedup

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    Pages 108-120

    Back-Translation for Discovering Distant Protein Homologies

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    Pages 121-132

    A Markov Classification Model for Metabolic Pathways

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    Pages 133-144

    Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory Interaction

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    Pages 145-156

    Phylogenetic Comparative Assembly

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    Pages 157-168

    K-Partite RNA Secondary Structures

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    Pages 169-180

    Efficient Algorithms for Analyzing Segmental Duplications, Deletions, and Inversions in Genomes

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    Pages 181-193

    Predicting Gene Structures from Multiple RT-PCR Tests

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    Pages 194-205

    A Tree Based Method for the Rapid Screening of Chemical Fingerprints

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    Pages 206-219

    Generalizing the Four Gamete Condition and Splits Equivalence Theorem: Perfect Phylogeny on Three State Characters

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    Pages 220-232

    Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes

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    Pages 233-245

    A General Framework for Local Pairwise Alignment Statistics with Gaps

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