Research in Computational Molecular Biology

13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings

Editors:

ISBN: 978-3-642-02007-0 (Print) 978-3-642-02008-7 (Online)

Table of contents (36 chapters)

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  1. Front Matter

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    Pages 1-15

    Searching Protein 3-D Structures in Linear Time

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    Pages 16-30

    Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification

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    Pages 31-45

    Boosting Protein Threading Accuracy

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    Pages 46-58

    New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees

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    Pages 59-73

    A Probabilistic Graphical Model for Ab Initio Folding

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    Pages 74-89

    Topology-Free Querying of Protein Interaction Networks

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    Pages 90-107

    Cross Species Expression Analysis of Innate Immune Response

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    Pages 108-120

    Haplotype Inference in Complex Pedigrees

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    Pages 121-137

    Storage and Retrieval of Individual Genomes

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    Pages 138-154

    An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations

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    Pages 155-169

    Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology

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    Pages 170-183

    Spatial Clustering of Multivariate Genomic and Epigenomic Information

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    Pages 184-200

    How Many Bootstrap Replicates Are Necessary?

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    Pages 201-216

    A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series

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    Pages 217-217

    Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulation

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    Pages 218-219

    Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes

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    Pages 220-235

    Optimizing PCR Assays for DNA Based Cancer Diagnostics

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    Pages 236-252

    The Multi-State Perfect Phylogeny Problem with Missing and Removable Data: Solutions via Integer-Programming and Chordal Graph Theory

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    Pages 253-269

    COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study

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    Pages 270-270

    Overlapping Pools for High Throughput Targeted Resequencing

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