Research in Computational Molecular Biology

11th Annual International Conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007. Proceedings

Editors:

ISBN: 978-3-540-71680-8 (Print) 978-3-540-71681-5 (Online)

Table of contents (37 chapters)

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  1. Front Matter

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    Pages 1-15

    QNet: A Tool for Querying Protein Interaction Networks

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    Pages 16-31

    Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology

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    Pages 32-46

    Reconstructing the Topology of Protein Complexes

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    Pages 47-61

    Network Legos: Building Blocks of Cellular Wiring Diagrams

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    Pages 62-76

    An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments

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    Pages 77-91

    A Feature-Based Approach to Modeling Protein-DNA Interactions

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    Pages 92-106

    Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking

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    Pages 107-121

    Nucleosome Occupancy Information Improves de novo Motif Discovery

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    Pages 122-136

    Framework for Identifying Common Aberrations in DNA Copy Number Data

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    Pages 137-150

    Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models

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    Pages 151-165

    GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data

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    Pages 166-180

    Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions

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    Pages 181-195

    Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding

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    Pages 196-210

    Reconstructing the Phylogeny of Mobile Elements

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    Pages 211-225

    Beyond Galled Trees - Decomposition and Computation of Galled Networks

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    Pages 226-237

    Variational Upper Bounds for Probabilistic Phylogenetic Models

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    Pages 238-252

    Heuristics for the Gene-Duplication Problem: A Θ(n) Speed-Up for the Local Search

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    Pages 253-267

    Support Vector Training of Protein Alignment Models

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    Pages 268-282

    Tools for Simulating and Analyzing RNA Folding Kinetics

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    Pages 283-295

    Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences

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