Structural Approaches to Sequence Evolution

Molecules, Networks, Populations

ISBN: 978-3-540-35305-8 (Print) 978-3-540-35306-5 (Online)

Table of contents (15 chapters)

  1. Front Matter

    Pages I-XIX

  2. Molecules: Proteins and RNA

    1. Front Matter

      Pages 1-1

    2. No Access

      Book Chapter

      Pages 3-36

      Modeling Conformational Flexibility and Evolution of Structure: RNA as an Example

    3. No Access

      Book Chapter

      Pages 37-55

      Gene3D and Understanding Proteome Evolution

    4. No Access

      Book Chapter

      Pages 57-74

      The Evolution of the Globins: We Thought We Understood It

    5. No Access

      Book Chapter

      Pages 75-112

      The Structurally Constrained Neutral Model of Protein Evolution

    6. No Access

      Book Chapter

      Pages 113-126

      Towards Unifying Protein Evolution Theory

  3. Molecules: Genomes

    1. Front Matter

      Pages 128-128

    2. No Access

      Book Chapter

      Pages 129-147

      A Twenty-First Century View of Evolution: Genome System Architecture, Repetitive DNA, and Natural Genetic Engineering

    3. No Access

      Book Chapter

      Pages 149-165

      Genomic Changes in Bacteria: From Free-Living to Endosymbiotic Life

  4. Phylogenetic Analysis

    1. Front Matter

      Pages 168-168

    2. No Access

      Book Chapter

      Pages 169-189

      Molecular Phylogenetics: Mathematical Framework and Unsolved Problems

    3. No Access

      Book Chapter

      Pages 191-205

      Phylogenetics and Computational Biology of Multigene Families

    4. No Access

      Book Chapter

      Pages 207-232

      SeqinR 1.0-2: A Contributed Package to the R Project for Statistical Computing Devoted to Biological Sequences Retrieval and Analysis

  5. Networks

    1. Front Matter

      Pages 234-234

    2. No Access

      Book Chapter

      Pages 235-252

      Evolutionary Genomics of Gene Expression

    3. No Access

      Book Chapter

      Pages 253-282

      From Biophysics to Evolutionary Genetics: Statistical Aspects of Gene Regulation

  6. Populations

    1. Front Matter

      Pages 284-284

    2. No Access

      Book Chapter

      Pages 285-298

      Drift and Selection in Evolving Interacting Systems

    3. No Access

      Book Chapter

      Pages 299-339

      Adaptation in Simple and Complex Fitness Landscapes

    4. No Access

      Book Chapter

      Pages 341-362

      Genetic Variability in RNA Viruses: Consequences in Epidemiology and in the Development of New Stratgies for the Extinction of Infectivity

  7. Back Matter

    Pages 363-367