Book Volume 15 2010

Frontiers in Computational and Systems Biology


ISBN: 978-1-84996-195-0 (Print) 978-1-84996-196-7 (Online)

Table of contents (19 chapters)

  1. Front Matter

    Pages I-XXV

  2. Chapter

    Pages 1-17

    Analysis of Combinatorial Gene Regulation with Thermodynamic Models

  3. Chapter

    Pages 19-37

    RNA Secondary Structure Prediction and Gene Regulation by Small RNAs

  4. Chapter

    Pages 39-59

    Some Critical Data Quality Control Issues of Oligoarrays

  5. Chapter

    Pages 61-81

    Stochastic-Process Approach to Nonequilibrium Thermodynamics and Biological Signal Transduction

  6. Chapter

    Pages 83-111

    Granger Causality: Theory and Applications

  7. Chapter

    Pages 113-131

    Transcription Factor Binding Site Identification by Phylogenetic Footprinting

  8. Chapter

    Pages 133-156

    Learning Network from High-Dimensional Array Data

  9. Chapter

    Pages 157-173

    Computational Methods for Predicting Domain–Domain Interactions

  10. Chapter

    Pages 175-201

    Irreversible Stochastic Processes, Coupled Diffusions and Systems Biochemistry

  11. Chapter

    Pages 203-218

    Probability Modeling and Statistical Inference in Periodic Cancer Screening

  12. Chapter

    Pages 219-230

    On Construction of the Smallest One-sided Confidence Intervals and Its Application in Identifying the Minimum Effective Dose

  13. Chapter

    Pages 231-248

    Group Variable Selection Methods and Their Applications in Analysis of Genomic Data

  14. Chapter

    Pages 249-257

    Modeling Protein-Signaling Networks with Granger Causality Test

  15. Chapter

    Pages 259-281

    DNA Copy Number Profiling in Normal and Tumor Genomes

  16. Chapter

    Pages 283-300

    Spatial Disease Surveillance: Methods and Applications

  17. Chapter

    Pages 301-329

    From QTL Mapping to eQTL Analysis

  18. Chapter

    Pages 331-349

    An Evaluation of Gene Module Concepts in the Interpretation of Gene Expression Data

  19. Chapter

    Pages 351-369

    Readout of Spike Waves in a Microcolumn

  20. Chapter

    Pages 371-381

    False Positive Control for Genome-Wide ChIP-Chip Tiling Arrays

  21. Back Matter

    Pages 383-401