Volume 6 2008

Anatomy Ontologies for Bioinformatics

Principles and Practice

ISBN: 978-1-84628-884-5 (Print) 978-1-84628-885-2 (Online)

Table of contents (16 chapters)

  1. Front Matter

    Pages I-XVI

  2. Existing Anatomy Ontologies for Human, Model Organisms and Plants

    1. Front Matter

      Pages 1-1

    2. No Access

      Book Chapter

      Pages 3-25

      Anatomical Ontologies for Model Organisms: The Fungi and Animals

    3. No Access

      Book Chapter

      Pages 27-42

      Plant Structure Ontology (PSO)— A Morphological and Anatomical Ontology of Flowering Plants

    4. No Access

      Book Chapter

      Pages 43-57

      Anatomy for Clinical Terminology

    5. No Access

      Book Chapter

      Pages 59-117

      The Foundational Model of Anatomy Ontology

    6. No Access

      Book Chapter

      Pages 119-130

      Towards a Disease Ontology

  3. Engineering and Linking of Anatomy Ontologies

    1. Front Matter

      Pages 131-131

    2. No Access

      Book Chapter

      Pages 133-149

      Ontology Alignment and Merging

    3. No Access

      Book Chapter

      Pages 151-162

      COBrA and COBrA-CT: Ontology Engineering Tools

    4. No Access

      Book Chapter

      Pages 163-175

      XSPAN — A Cross-Species Anatomy Network

    5. No Access

      Book Chapter

      Pages 177-194

      Searching Biomedical Literature with Anatomy Ontologies

  4. Anatomy Ontologies and Spatio-Temporal Atlases

    1. Front Matter

      Pages 195-195

    2. No Access

      Book Chapter

      Pages 197-211

      Anatomical Ontologies: Linking Names to Places in Biology

    3. No Access

      Book Chapter

      Pages 213-247

      Time in Anatomy

    4. No Access

      Book Chapter

      Pages 249-265

      The Edinburgh Mouse Atlas

    5. No Access

      Book Chapter

      Pages 267-286

      The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data

  5. Anatomy Ontologies – Modelling Principles

    1. Front Matter

      Pages 287-287

    2. No Access

      Book Chapter

      Pages 289-306

      Modelling Principles and Methodologies – Relations in Anatomical Ontologies

    3. No Access

      Book Chapter

      Pages 307-326

      Modeling Principles and Methodologies - Spatial Representation and Reasoning

    4. No Access

      Book Chapter

      Pages 327-349

      CARO – The Common Anatomy Reference Ontology

  6. Back Matter

    Pages 351-354