Computational Toxicology

Volume II

Editors:

ISBN: 978-1-62703-058-8 (Print) 978-1-62703-059-5 (Online)

Table of contents (25 protocols)

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  1. Front Matter

    Pages i-xi

  2. Toxicological/Pharmacological Endpoint Prediction

    1. Front Matter

      Pages 1-1

    2. No Access

      Book Protocol

      Pages 3-27

      Methods for Building QSARs

    3. No Access

      Book Protocol

      Pages 29-52

      Accessing and Using Chemical Databases

    4. No Access

      Book Protocol

      Pages 53-65

      From QSAR to QSIIR: Searching for Enhanced Computational Toxicology Models

    5. No Access

      Book Protocol

      Pages 67-98

      Mutagenicity, Carcinogenicity, and Other End points

    6. No Access

      Book Protocol

      Pages 99-124

      Classification Models for Safe Drug Molecules

    7. No Access

      Book Protocol

      Pages 125-162

      QSAR and Metabolic Assessment Tools in the Assessment of Genotoxicity

  3. Biological Network Modeling

    1. Front Matter

      Pages 163-163

    2. No Access

      Book Protocol

      Pages 165-178

      Gene Expression Networks

    3. No Access

      Book Protocol

      Pages 179-214

      Construction of Cell Type-Specific Logic Models of Signaling Networks Using CellNOpt

    4. No Access

      Book Protocol

      Pages 215-234

      Regulatory Networks

    5. No Access

      Book Protocol

      Pages 235-249

      Computational Reconstruction of Metabolic Networks from KEGG

  4. Biomarkers

    1. Front Matter

      Pages 251-251

    2. No Access

      Book Protocol

      Pages 253-273

      Biomarkers

    3. No Access

      Book Protocol

      Pages 275-293

      Biomonitoring-based Environmental Public Health Indicators

  5. Modeling for Regulatory Purposes (Risk and Safety Assessment)

    1. Front Matter

      Pages 295-295

    2. No Access

      Book Protocol

      Pages 297-303

      Modeling for Regulatory Purposes (Risk and Safety Assessment)

    3. No Access

      Book Protocol

      Pages 305-340

      Developmental Toxicity Prediction

    4. No Access

      Book Protocol

      Pages 341-354

      Predictive Computational Toxicology to Support Drug Safety Assessment

  6. Integrated Modeling/Systems Toxicology Approaches

    1. Front Matter

      Pages 355-355

    2. No Access

      Book Protocol

      Pages 357-374

      Developing a Practical Toxicogenomics Data Analysis System Utilizing Open-Source Software

    3. No Access

      Book Protocol

      Pages 375-397

      Systems Toxicology from Genes to Organs

    4. No Access

      Book Protocol

      Pages 399-426

      Agent-Based Models of Cellular Systems

  7. Mathematical and Statistical Background

    1. Front Matter

      Pages 427-427

    2. No Access

      Book Protocol

      Pages 429-473

      Linear Algebra

    3. No Access

      Book Protocol

      Pages 475-498

      Ordinary Differential Equations

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