DNA Barcodes

Methods and Protocols

Editors:

ISBN: 978-1-61779-590-9 (Print) 978-1-61779-591-6 (Online)

Table of contents (23 protocols)

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  1. Front Matter

    Pages i-xv

  2. Introduction

    1. Front Matter

      Pages 1-1

    2. No Access

      Book Protocol

      Pages 3-8

      DNA Barcodes: Methods and Protocols

  3. DNA Barcodes for the Tree of Life

    1. Front Matter

      Pages 9-9

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      Book Protocol

      Pages 11-16

      Introduction to Animal DNA Barcoding Protocols

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      Book Protocol

      Pages 17-46

      DNA Barcodes for Insects

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      Book Protocol

      Pages 47-77

      DNA Barcoding Methods for Invertebrates

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      Book Protocol

      Pages 79-107

      DNA Barcoding Amphibians and Reptiles

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      Book Protocol

      Pages 109-126

      DNA Barcoding Fishes

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      Book Protocol

      Pages 127-152

      DNA Barcoding Birds: From Field Collection to Data Analysis

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      Book Protocol

      Pages 153-182

      DNA Barcoding in Mammals

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      Book Protocol

      Pages 183-205

      Methods for DNA Barcoding of Fungi

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      Book Protocol

      Pages 207-222

      Methods for DNA Barcoding Photosynthetic Protists Emphasizing the Macroalgae and Diatoms

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      Book Protocol

      Pages 223-252

      DNA Barcoding Methods for Land Plants

  4. Generating DNA Barcode Data

    1. Front Matter

      Pages 253-253

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      Book Protocol

      Pages 255-267

      Field Information Management Systems for DNA Barcoding

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      Book Protocol

      Pages 269-310

      Laboratory Information Management Systems for DNA Barcoding

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      Book Protocol

      Pages 311-338

      DNA Extraction, Preservation, and Amplification

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      Book Protocol

      Pages 339-353

      DNA Mini-barcodes

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      Book Protocol

      Pages 355-361

      Ways to Mix Multiple PCR Amplicons into Single 454 Run for DNA Barcoding

  5. Applications of DNA Barcode Data

    1. Front Matter

      Pages 363-363

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      Book Protocol

      Pages 365-377

      The Practical Evaluation of DNA Barcode Efficacy

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      Book Protocol

      Pages 379-393

      Plant DNA Barcodes, Taxonomic Management, and Species Discovery in Tropical Forests

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      Book Protocol

      Pages 395-408

      Construction and Analysis of Phylogenetic Trees Using DNA Barcode Data

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      Book Protocol

      Pages 409-419

      Phylogenetic Analyses of Ecological Communities Using DNA Barcode Data

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