Data Mining Techniques for the Life Sciences

Editors:

ISBN: 978-1-60327-240-7 (Print) 978-1-60327-241-4 (Online)

Table of contents (22 protocols)

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  1. Front Matter

    Pages i-xii

  2. Databases

    1. Front Matter

      Pages 1-1

    2. No Access

      Book Protocol

      Pages 3-15

      Nucleic Acid Sequence and Structure Databases

    3. No Access

      Book Protocol

      Pages 17-44

      Genomic Databases and Resources at the National Center for Biotechnology Information

    4. No Access

      Book Protocol

      Pages 45-57

      Protein Sequence Databases

    5. No Access

      Book Protocol

      Pages 59-82

      Protein Structure Databases

    6. No Access

      Book Protocol

      Pages 83-95

      Protein Domain Architectures

    7. No Access

      Book Protocol

      Pages 97-112

      Thermodynamic Database for Proteins: Features and Applications

    8. No Access

      Book Protocol

      Pages 113-128

      Enzyme Databases

    9. No Access

      Book Protocol

      Pages 129-144

      Biomolecular Pathway Databases

    10. No Access

      Book Protocol

      Pages 145-159

      Databases of Protein–Protein Interactions and Complexes

  3. Data Mining Techniques

    1. Front Matter

      Pages 161-161

    2. No Access

      Book Protocol

      Pages 163-174

      Proximity Measures for Cluster Analysis

    3. No Access

      Book Protocol

      Pages 175-196

      Clustering Criteria and Algorithms

    4. No Access

      Book Protocol

      Pages 197-222

      Neural Networks

    5. No Access

      Book Protocol

      Pages 223-239

      A User’s Guide to Support Vector Machines

    6. No Access

      Book Protocol

      Pages 241-253

      Hidden Markov Models in Biology

  4. Database Annotations and Predictions

    1. Front Matter

      Pages 255-255

    2. No Access

      Book Protocol

      Pages 257-267

      Integrated Tools for Biomolecular Sequence-Based Function Prediction as Exemplified by the ANNOTATOR Software Environment

    3. No Access

      Book Protocol

      Pages 269-284

      Computational Methods for Ab Initio and Comparative Gene Finding

    4. No Access

      Book Protocol

      Pages 285-306

      Sequence and Structure Analysis of Noncoding RNAs

    5. No Access

      Book Protocol

      Pages 307-325

      Conformational Disorder

    6. No Access

      Book Protocol

      Pages 327-348

      Protein Secondary Structure Prediction

    7. No Access

      Book Protocol

      Pages 349-364

      Analysis and Prediction of Protein Quaternary Structure

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