Microarray Analysis of the Physical Genome

Methods and Protocols

Editors:

ISBN: 978-1-60327-191-2 (Print) 978-1-60327-192-9 (Online)

Table of contents (15 protocols)

  1. Front Matter

    Pages i-x

  2. No Access

    Book Protocol

    Pages 1-6

    Introduction

  3. No Access

    Book Protocol

    Pages 7-19

    Comparative Genomic Hybridization on BAC Arrays

  4. No Access

    Book Protocol

    Pages 21-32

    Comparative Genomic Hybridization on Spotted Oligonucleotide Microarrays

  5. No Access

    Book Protocol

    Pages 33-46

    Comparative Genomic Hybridization by Representational Oligonucleotide Microarray Analysis

  6. No Access

    Book Protocol

    Pages 47-65

    Application of Oligonucleotides Arrays for Coincident Comparative Genomic Hybridization, Ploidy Status and Loss of Heterozygosity Studies in Human Cancers

  7. No Access

    Book Protocol

    Pages 67-87

    Molecular Inversion Probe Assay for Allelic Quantitation

  8. No Access

    Book Protocol

    Pages 89-98

    A Whole-Genome Amplification Protocol for a Wide Variety of DNAs, Including Those from Formalin-Fixed and Paraffin-Embedded Tissue

  9. No Access

    Book Protocol

    Pages 99-116

    Algorithms for Calling Gains and Losses in Array CGH Data

  10. No Access

    Book Protocol

    Pages 117-139

    Methylation Analysis by Microarray

  11. No Access

    Book Protocol

    Pages 141-153

    Methylation Analysis by DNA Immunoprecipitation (MeDIP)

  12. No Access

    Book Protocol

    Pages 155-164

    Combining Chromatin Immunoprecipitation and Oligonucleotide Tiling Arrays (ChIP-Chip) for Functional Genomic Studies

  13. No Access

    Book Protocol

    Pages 165-175

    ChIP-Chip: Algorithms for Calling Binding Sites

  14. No Access

    Book Protocol

    Pages 177-190

    Mapping Regulatory Elements by DNaseI Hypersensitivity Chip (DNase-Chip)

  15. No Access

    Book Protocol

    Pages 191-203

    Microarray Analysis of DNA Replication Timing

  16. No Access

    Book Protocol

    Pages 205-216

    Integration of Diverse Microarray Data Types

  17. Back Matter

    Pages 217-223