Plant Bioinformatics

Methods and Protocols

Editors:

ISBN: 978-1-58829-653-5 (Print) 978-1-59745-535-0 (Online)

Table of contents (26 protocols)

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  1. Front Matter

    Pages i-xv

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    Pages 1-21

    The EMBL Nucleotide Sequence and Genome Reviews Databases

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    Pages 23-59

    Using GenBank

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    Pages 61-87

    A Collection of Plant-Specific Genomic Data and Resources at NCBI

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    Pages 89-112

    UniProtKB/Swiss-Prot

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    Pages 113-136

    Plant Database Resources at The Institute for Genomic Research

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    Pages 137-159

    MIPS Plant Genome Information Resources

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    Pages 161-177

    HarvEST

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    Pages 179-212

    The TAIR Database

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    Pages 213-227

    AtEnsEMBL

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    Pages 229-243

    Accessing Integrated Brassica

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    Pages 245-259

    Leveraging Model Legume Information to Find Candidate Genes for Soybean Sudden Death Syndrome Using the Legume Information System

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    Pages 261-274

    Legume Resources: MtDB and Medicago.Org

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    Pages 275-299

    BGI-RIS V2

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    Pages 301-314

    GrainGenes

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    Pages 315-329

    Gramene

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    Pages 331-345

    MaizeGDB

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    Pages 347-363

    BarleyBase/PLEXdb

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    Pages 365-386

    Reaping the Benefits of SAGE

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    Pages 387-407

    Methods for Analysis of Gene Expression in Plants Using MPSS

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    Pages 409-436

    Metabolomics Data Analysis, Visualization, and Integration

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