E-Cell System

Basic Concepts and Applications

ISBN: 978-1-4614-6156-2 (Print) 978-1-4614-6157-9 (Online)

Table of contents (11 chapters)

  1. Front Matter

    Pages i-xiv

  2. Basic Concepts

    1. Front Matter

      Pages 1-1

    2. No Access

      Book Chapter

      Pages 3-14

      Introduction to Whole Cell Modeling

    3. No Access

      Book Chapter

      Pages 15-32

      Foundations of E-Cell Simulation Environment Architecture

    4. No Access

      Book Chapter

      Pages 33-41

      Distributed Cell Biology Simulations with the E-Cell System

    5. No Access

      Book Chapter

      Pages 43-62

      A Guide to Modeling Reaction-Diffusion of Molecules with the E-Cell System

  3. Applications

    1. Front Matter

      Pages 63-63

    2. No Access

      Book Chapter

      Pages 65-73

      A Model Library of Bacterial Chemotaxis on E-Cell System

    3. No Access

      Book Chapter

      Pages 75-88

      Electrophysiological Simulation of Developmental Changes in Action Potentials of Cardiomyocytes

    4. No Access

      Book Chapter

      Pages 89-104

      Simulation of Human Erythrocyte Metabolism

    5. No Access

      Book Chapter

      Pages 105-142

      Dynamic Kinetic Modeling of Mitochondrial Energy Metabolism

    6. No Access

      Book Chapter

      Pages 143-155

      A Computational Model of the Hepatic Lobule

    7. No Access

      Book Chapter

      Pages 157-167

      Decoding the Signaling Mechanism of Toll-Like Receptor 4 Pathways in Wild Type and Knockouts

    8. No Access

      Book Chapter

      Pages 169-176

      Modeling of Hsp70-Mediated Protein Refolding

  4. Back Matter

    Pages 177-179