2012

Bioinformatics for High Throughput Sequencing

ISBN: 978-1-4614-0781-2 (Print) 978-1-4614-0782-9 (Online)

Table of contents (14 chapters)

  1. Front Matter

    Pages i-xi

  2. No Access

    Book Chapter

    Pages 1-9

    Introduction

  3. No Access

    Book Chapter

    Pages 11-25

    Overview of Sequencing Technology Platforms

  4. No Access

    Book Chapter

    Pages 27-53

    Applications of High-Throughput Sequencing

  5. No Access

    Book Chapter

    Pages 55-65

    Computational Infrastructure and Basic Data Analysis for High-Throughput Sequencing

  6. No Access

    Book Chapter

    Pages 67-83

    Base-Calling for Bioinformaticians

  7. No Access

    Book Chapter

    Pages 85-105

    De Novo Short-Read Assembly

  8. No Access

    Book Chapter

    Pages 107-125

    Short-Read Mapping

  9. No Access

    Book Chapter

    Pages 127-149

    DNA–Protein Interaction Analysis (ChIP-Seq)

  10. No Access

    Book Chapter

    Pages 151-167

    Generation and Analysis of Genome-Wide DNA Methylation Maps

  11. No Access

    Book Chapter

    Pages 169-190

    Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design

  12. No Access

    Book Chapter

    Pages 191-208

    MicroRNA Expression Profiling and Discovery

  13. No Access

    Book Chapter

    Pages 209-218

    Dissecting Splicing Regulatory Network by Integrative Analysis of CLIP-Seq Data

  14. No Access

    Book Chapter

    Pages 219-229

    Analysis of Metagenomics Data

  15. No Access

    Book Chapter

    Pages 231-248

    High-Throughput Sequencing Data Analysis Software: Current State and Future Developments

  16. Back Matter

    Pages 249-255