2010

Biomedical Informatics for Cancer Research

Editors:

ISBN: 978-1-4419-5712-2 (Print) 978-1-4419-5714-6 (Online)

Table of contents (20 chapters)

  1. Front Matter

    Pages i-xviii

  2. Concepts, Issues, and Approaches

    1. Front Matter

      Pages 1-1

    2. No Access

      Book Chapter

      Pages 3-15

      Biomedical Informatics for Cancer Research: Introduction

    3. No Access

      Book Chapter

      Pages 17-37

      Clinical Research Systems and Integration with Medical Systems

    4. No Access

      Book Chapter

      Pages 39-71

      Data Management, Databases, and Warehousing

    5. No Access

      Book Chapter

      Pages 73-90

      Middleware Architecture Approaches for Collaborative Cancer Research

    6. No Access

      Book Chapter

      Pages 91-115

      Federated Authentication

    7. No Access

      Book Chapter

      Pages 117-137

      Genomics Data Analysis Pipelines

    8. No Access

      Book Chapter

      Pages 139-147

      Mathematical Modeling in Cancer

    9. No Access

      Book Chapter

      Pages 149-175

      Reproducible Research Concepts and Tools for Cancer Bioinformatics

    10. No Access

      Book Chapter

      Pages 177-200

      The Cancer Biomedical Informatics Grid (caBIG): An Evolving Community for Cancer Research

  3. Tools and Applications

    1. Front Matter

      Pages 202-202

    2. No Access

      Book Chapter

      Pages 203-213

      The caBIG Clinical Trials Suite

    3. No Access

      Book Chapter

      Pages 215-225

      The CAISIS Research Data System

    4. No Access

      Book Chapter

      Pages 227-239

      A Common Application Framework that is Extensible: CAF-É

    5. No Access

      Book Chapter

      Pages 241-251

      Shared Resource Management

    6. No Access

      Book Chapter

      Pages 253-266

      The caBIG® Life Sciences Distribution

    7. No Access

      Book Chapter

      Pages 267-277

      MeV: MultiExperiment Viewer

    8. No Access

      Book Chapter

      Pages 279-290

      Authentication and Authorization in Cancer Research Systems

    9. No Access

      Book Chapter

      Pages 291-300

      Caching and Visualizing Statistical Analyses

    10. No Access

      Book Chapter

      Pages 301-314

      Familial Cancer Risk Assessment Using BayesMendel

    11. No Access

      Book Chapter

      Pages 315-333

      Interpreting and Comparing Clustering Experiments Through Graph Visualization and Ontology Statistical Enrichment with the ClutrFree Package

    12. No Access

      Book Chapter

      Pages 335-345

      Enhanced Dynamic Documents for Reproducible Research

  4. Back Matter

    Pages 347-354