Mathematics of DNA Structure, Function and Interactions

ISBN: 978-1-4419-0669-4 (Print) 978-1-4419-0670-0 (Online)

Table of contents (16 chapters)

  1. Front Matter

    Pages i-xi

  2. No Access

    Book Chapter

    Pages 1-5

    Nick Cozzarelli: A Personal Remembrance

  3. No Access

    Book Chapter

    Pages 7-36

    Mathematical Methods in Dna Topology: Applications to Chromosome Organization and Site-Specific Recombination

  4. No Access

    Book Chapter

    Pages 37-52

    Conformational Statistics of Dna and Diffusion Equations on The Euclidean Group

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    Book Chapter

    Pages 53-71

    Perspectives On DNA Looping

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    Book Chapter

    Pages 73-121

    Differences Between Positively and Negatively Supercoiled DNA that Topoisomerases May Distinguish

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    Book Chapter

    Pages 123-138

    Calibration of Tethered Particle Motion Experiments

  8. No Access

    Book Chapter

    Pages 139-158

    Difference Topology: Analysis of High-Order DNA-Protin Assemblies

  9. No Access

    Book Chapter

    Pages 159-175

    Useful Intrusions of DNA Topology Into Experiments on Protein-DNA Geometry

  10. No Access

    Book Chapter

    Pages 177-194

    Topological Analysis of DNA-Protein Complexes

  11. No Access

    Book Chapter

    Pages 195-212

    Closing the Loop on Protein-DNA Interactions: Interplay Between Shape and Flexibility in Nucleoprotein Assemblies Having Implications for Biological Regulation

  12. No Access

    Book Chapter

    Pages 213-224

    Four-Way Helical Junctions in DNA Molecules

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    Book Chapter

    Pages 225-249

    Micromechanics of Single Supercoiled DNA Molecules

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    Book Chapter

    Pages 251-291

    Flexibility Of Nucleosomes On Topologically Constrained DNA

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    Book Chapter

    Pages 293-320

    The Mathematics of DNA Sturcture, Mechanics, and Dynamics

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    Book Chapter

    Pages 321-329

    Paradox Regained: a Topological Coupling of Nuclesomal DNA Wrapping and Chromatin Fibre Coiling

  17. No Access

    Book Chapter

    Pages 331-346

    Statistical-Mechanical Analysis of Enzymatic Topological Transformations in DNA Molecules

  18. Back Matter

    Pages 1-8