Volume 4 2004

Phylogenetic Supertrees

Combining information to reveal the Tree of Life

Editors:

ISBN: 978-1-4020-2329-3 (Print) 978-1-4020-2330-9 (Online)

Table of contents (23 chapters)

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  1. Front Matter

    Pages i-xiv

  2. Introduction

    1. Front Matter

      Pages 1-1

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      Book Chapter

      Pages 3-14

      New uses for old phylogenies

  3. Reviews of existing methods

    1. Front Matter

      Pages 15-15

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      Book Chapter

      Pages 17-34

      The MRP Method

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      Book Chapter

      Pages 35-63

      An Assessment of Matrix Representation with Compatibility in Supertree Construction

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      Book Chapter

      Pages 65-85

      MRF Supertrees

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      Book Chapter

      Pages 87-105

      Everything You always wanted to Know about the Average Consensus, and More

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      Book Chapter

      Pages 107-125

      Tangled Tales from Multiple Markers

  4. New supertree methods

    1. Front Matter

      Pages 127-127

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      Book Chapter

      Pages 129-150

      Supertree Methods for Ancestral Divergence Dates and other Applications

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      Book Chapter

      Pages 151-171

      Supertree Algorithms for Nested Taxa

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      Book Chapter

      Pages 173-191

      Quartet Supertrees

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      Book Chapter

      Pages 193-224

      Bayesian Supertrees

  5. Methodological considerations

    1. Front Matter

      Pages 225-225

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      Book Chapter

      Pages 227-246

      Some Desiderata for Liberal Supertrees

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      Book Chapter

      Pages 247-265

      Taxonomy, Supertrees, and the Tree of Life

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      Book Chapter

      Pages 267-280

      Garbage in, Garbage out

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      Book Chapter

      Pages 281-299

      Reconstructing Divergence Times for Supertrees

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      Book Chapter

      Pages 301-328

      Performance of Supertree Methods on Various Data Set Decompositions

  6. A critical look a supertrees

    1. Front Matter

      Pages 329-329

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      Book Chapter

      Pages 331-351

      Unrooted Supertrees

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      Book Chapter

      Pages 353-368

      The Cladistics of Matrix Representation with Parsimony Analysis

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      Book Chapter

      Pages 369-388

      A Critique of Matrix Representation with Parsimony Supertrees

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      Book Chapter

      Pages 389-408

      Supertrees, Components and Three-Item Data

  7. Supertrees and their applications

    1. Front Matter

      Pages 409-409

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      Book Chapter

      Pages 411-437

      A Molecular Supertree of the Artiodactyla

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