Biophysics of DNA-Protein Interactions

From Single Molecules to Biological Systems

Editors:

ISBN: 978-0-387-92807-4 (Print) 978-0-387-92808-1 (Online)

Table of contents (14 chapters)

  1. Front Matter

    Pages i-x

  2. Binding DNA and Changing its Shape

    1. Front Matter

      Pages 1-1

    2. No Access

      Book Chapter

      Pages 3-8

      Introduction to Biophysics of DNA–Protein Interactions: From Single Molecules to Biological Systems

    3. No Access

      Book Chapter

      Pages 9-38

      Single-Molecule Imaging of LacI Diffusing Along Nonspecific DNA

    4. No Access

      Book Chapter

      Pages 39-68

      How Proteins Slide on DNA

    5. No Access

      Book Chapter

      Pages 69-84

      Role of DNA Conformations in Gene Regulation

    6. No Access

      Book Chapter

      Pages 85-106

      Recognition of Nucleic Acids by Transcription Factor NF-κB

    7. No Access

      Book Chapter

      Pages 107-142

      Dynamics and Mechanism of DNA-Bending Proteins in Binding Site Recognition

    8. No Access

      Book Chapter

      Pages 143-162

      Studies of Sequence-Nonspecific HMGB DNA-Binding Proteins

    9. No Access

      Book Chapter

      Pages 163-189

      DNA Interactions with Single-Stranded DNA Binding Proteins and Retroviral Nucleic Acid Chaperones by Force Spectroscopy

  3. Complex Protein-DNA Interactions

    1. Front Matter

      Pages 191-191

    2. No Access

      Book Chapter

      Pages 193-212

      DNA Looping in Prophage Lambda: New Insight from Single-Molecule Microscopy

    3. No Access

      Book Chapter

      Pages 213-239

      Dynamics of Protein–ssDNA Interactions in the Bacteriophage T4 Homologous Recombination System

    4. No Access

      Book Chapter

      Pages 241-292

      Polymerase Switching in Response to DNA Damage

    5. No Access

      Book Chapter

      Pages 293-306

      Topological Probes of a Cooperative, Nonspecific Protein–DNA Complex

    6. No Access

      Book Chapter

      Pages 307-323

      How to Think Like a Single Molecule: Obtaining Quantitative Measurements on Single DNA Molecules and Chromatin Fibers

    7. No Access

      Book Chapter

      Pages 325-339

      Long-Range Chromatin Interactions in Cells

  4. Back Matter

    Pages 341-349