Computational Life Sciences II

Second International Symposium, CompLife 2006, Cambridge, UK, September 27-29, 2006. Proceedings

Editors:

ISBN: 978-3-540-45767-1 (Print) 978-3-540-45768-8 (Online)

Table of contents (25 chapters)

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  1. Front Matter

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  2. Genomics

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      Pages 1-10

      Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering

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      Pages 11-20

      A Hybrid Grid and Its Application to Orthologous Groups Clustering

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      Pages 21-31

      Promoter Prediction Using Physico-Chemical Properties of DNA

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      Pages 32-41

      Parametric Spectral Analysis of Malaria Gene Expression Time Series Data

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      Pages 42-51

      An Efficient Algorithm for Finding Long Conserved Regions Between Genes

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      Pages 52-63

      The Reversal Median Problem, Common Intervals, and Mitochondrial Gene Orders

  3. Data Mining

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      Pages 64-73

      Building Structure-Property Predictive Models Using Data Assimilation

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      Pages 74-85

      Set-Oriented Dimension Reduction: Localizing Principal Component Analysis Via Hidden Markov Models

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      Pages 86-96

      Relational Subgroup Discovery for Descriptive Analysis of Microarray Data

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      Pages 97-106

      Applicability of Loop Recombination in Ciliates Using the Breakpoint Graph

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      Pages 107-118

      High-Throughput Identification of Chemistry in Life Science Texts

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      Pages 119-128

      Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level

  4. Molecular Simulation

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      Pages 129-140

      Dynamic Complexity of Chaotic Transitions in High-Dimensional Classical Dynamics: Leu-Enkephalin Folding

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      Pages 141-149

      Solvent Effects and Conformational Stability of a Tripeptide

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      Pages 150-161

      Grid Assisted Ensemble Molecular Dynamics Simulations of HIV-1 Proteases Reveal Novel Conformations of the Inhibitor Saquinavir

  5. Molecular Informatics

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      Pages 162-172

      A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants

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      Pages 173-182

      Classifying the World Anti-Doping Agency’s 2005 Prohibited List Using the Chemistry Development Kit Fingerprint

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      Pages 183-193

      A Point-Matching Based Algorithm for 3D Surface Alignment of Drug-Sized Molecules

  6. Systems Biology

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      Pages 194-204

      Adaptive Approach for Modelling Variability in Pharmacokinetics

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      Pages 205-215

      A New Approach to Flux Coupling Analysis of Metabolic Networks

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