Data Integration in the Life Sciences

Third International Workshop, DILS 2006, Hinxton, UK, July 20-22, 2006. Proceedings

Editors:

ISBN: 978-3-540-36593-8 (Print) 978-3-540-36595-2 (Online)

Table of contents (25 chapters)

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  1. Front Matter

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  2. Keynotes

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      Pages 1-1

      An Application Driven Perspective on Biological Data Integration

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      Pages 2-2

      Towards a National Healthcare Information Infrastructure

  3. Data Integration

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      Pages 3-18

      Data Access and Integration in the ISPIDER Proteomics Grid

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      Pages 19-34

      A Cell-Cycle Knowledge Integration Framework

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      Pages 35-49

      Link Discovery in Graphs Derived from Biological Databases

  4. Text Mining

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      Pages 50-65

      Towards an Automated Analysis of Biomedical Abstracts

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      Pages 66-81

      Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions

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      Pages 82-93

      SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies

  5. Systems I

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      Pages 94-103

      SABIO-RK: Integration and Curation of Reaction Kinetics Data

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      Pages 104-113

      SIBIOS Ontology: A Robust Package for the Integration and Pipelining of Bioinformatics Services

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      Pages 114-123

      Data Structures for Genome Annotation, Alternative Splicing, and Validation

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      Pages 124-135

      BioFuice: Mapping-Based Data Integration in Bioinformatics

  6. Potpourri

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      Pages 136-151

      A Method for Similarity-Based Grouping of Biological Data

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      Pages 152-167

      On Querying OBO Ontologies Using a DAG Pattern Query Language

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      Pages 168-184

      Using Term Lists and Inverted Files to Improve Search Speed for Metabolic Pathway Databases

  7. Systems II

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      Pages 185-194

      Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV

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      Pages 195-203

      The Distributed Annotation System for Integration of Biological Data

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      Pages 204-215

      An Information Management System for Collaboration Within Distributed Working Environment

  8. Short Papers

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      Pages 216-223

      Ontology Analysis on Complexity and Evolution Based on Conceptual Model

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      Pages 224-231

      Distributed Execution of Workflows in the INB

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