Research in Computational Molecular Biology

10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006. Proceedings

  • Alberto Apostolico
  • Concettina Guerra
  • Sorin Istrail
  • Pavel A. Pevzner
  • Michael Waterman
Conference proceedings RECOMB 2006

DOI: 10.1007/11732990

Part of the Lecture Notes in Computer Science book series (LNCS, volume 3909)

Table of contents (49 papers)

  1. Front Matter
  2. Integrated Protein Interaction Networks for 11 Microbes
    Balaji S. Srinivasan, Antal F. Novak, Jason A. Flannick, Serafim Batzoglou, Harley H. McAdams
    Pages 1-14
  3. Assessing Significance of Connectivity and Conservation in Protein Interaction Networks
    Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski
    Pages 45-59
  4. Clustering Short Gene Expression Profiles
    Ling Wang, Marco Ramoni, Paola Sebastiani
    Pages 60-68
  5. An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets
    Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron
    Pages 85-98
  6. Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data
    Jim C. Huang, Quaid D. Morris, Brendan J. Frey
    Pages 114-129
  7. RNA Secondary Structure Prediction Via Energy Density Minimization
    Can Alkan, Emre Karakoc, S. Cenk Sahinalp, Peter Unrau, H. Alexander Ebhardt, Kaizhong Zhang et al.
    Pages 130-142
  8. Structural Alignment of Pseudoknotted RNA
    Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
    Pages 143-158
  9. Stan Ulam and Computational Biology
    Michael S. Waterman
    Pages 159-159
  10. CONTRAlign: Discriminative Training for Protein Sequence Alignment
    Chuong B. Do, Samuel S. Gross, Serafim Batzoglou
    Pages 160-174
  11. Clustering Near-Identical Sequences for Fast Homology Search
    Michael Cameron, Yaniv Bernstein, Hugh E. Williams
    Pages 175-189
  12. New Methods for Detecting Lineage-Specific Selection
    Adam Siepel, Katherine S. Pollard, David Haussler
    Pages 190-205
  13. A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric
    Nicholas D. Pattengale, Bernard M. E. Moret
    Pages 221-230

About these proceedings

Keywords

Alignment algorithm algorithms bioinformatics complexity computaional molecular biology computational biology computational graph theory computational proteomics genome data analysis ontology pattern matching protein fold recogniton proving similarity r

Editors and affiliations

  • Alberto Apostolico
    • 1
  • Concettina Guerra
    • 2
  • Sorin Istrail
    • 3
  • Pavel A. Pevzner
    • 4
  • Michael Waterman
    • 5
  1. 1.Georgia Institute of Technology and Università di Padova 
  2. 2.Topic Chairs
  3. 3.Center for Molecular Biology and Computer Sciecne DepartmentBrown UniversityProvidenceUSA
  4. 4.University of CaliforniaSan DiegoUSA
  5. 5.Department of Molecular and Computational BiologyUniversity of Southern CaliforniaLos AngelesUSA

Bibliographic information

  • Copyright Information Springer-Verlag Berlin Heidelberg 2006
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science
  • Print ISBN 978-3-540-33295-4
  • Online ISBN 978-3-540-33296-1
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349