Research in Computational Molecular Biology

10th Annual International Conference, RECOMB 2006, Venice, Italy, April 2-5, 2006. Proceedings

ISBN: 978-3-540-33295-4 (Print) 978-3-540-33296-1 (Online)

Table of contents (49 chapters)

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  1. Front Matter

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    Pages 1-14

    Integrated Protein Interaction Networks for 11 Microbes

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    Pages 15-29

    Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially–Constrained Partitioning Algorithms for Optimization of Site-Directed Protein Recombination

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    Pages 30-44

    Biological Networks: Comparison, Conservation, and Evolutionary Trees

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    Pages 45-59

    Assessing Significance of Connectivity and Conservation in Protein Interaction Networks

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    Pages 60-68

    Clustering Short Gene Expression Profiles

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    Pages 69-82

    A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies

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    Pages 83-83

    Global Interaction Networks Probed by Mass Spectrometry

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    Pages 84-84

    Statistical Evaluation of Genome Rearrangement

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    Pages 85-98

    An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets

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    Pages 99-113

    Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization

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    Pages 114-129

    Detecting MicroRNA Targets by Linking Sequence, MicroRNA and Gene Expression Data

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    Pages 130-142

    RNA Secondary Structure Prediction Via Energy Density Minimization

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    Pages 143-158

    Structural Alignment of Pseudoknotted RNA

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    Pages 159-159

    Stan Ulam and Computational Biology

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    Pages 160-174

    CONTRAlign: Discriminative Training for Protein Sequence Alignment

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    Pages 175-189

    Clustering Near-Identical Sequences for Fast Homology Search

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    Pages 190-205

    New Methods for Detecting Lineage-Specific Selection

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    Pages 206-220

    A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer

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    Pages 221-230

    A Sublinear-Time Randomized Approximation Scheme for the Robinson-Foulds Metric

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    Pages 231-245

    Algorithms to Distinguish the Role of Gene-Conversion from Single-Crossover Recombination in the Derivation of SNP Sequences in Populations

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