Applications of Evolutionary Computing

EvoWorkshops 2006: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoINTERACTION, EvoMUSART, and EvoSTOC, Budapest, Hungary, April 10-12, 2006. Proceedings

ISBN: 978-3-540-33237-4 (Print) 978-3-540-33238-1 (Online)

Table of contents (78 chapters)

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  1. Front Matter

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  2. EvoBIO Contributions

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      Pages 1-12

      Functional Classification of G-Protein Coupled Receptors, Based on Their Specific Ligand Coupling Patterns

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      Pages 13-22

      Incorporating Biological Domain Knowledge into Cluster Validity Assessment

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      Pages 23-33

      A Novel Mathematical Model for the Optimization of DNA–Chip Design and Its Implementation

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      Pages 34-44

      A Hybrid GA/SVM Approach for Gene Selection and Classification of Microarray Data

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      Pages 45-56

      Multi-stage Evolutionary Algorithms for Efficient Identification of Gene Regulatory Networks

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      Pages 57-66

      Human Papillomavirus Risk Type Classification from Protein Sequences Using Support Vector Machines

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      Pages 67-78

      Hierarchical Clustering, Languages and Cancer

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      Pages 79-90

      Robust SVM-Based Biomarker Selection with Noisy Mass Spectrometric Proteomic Data

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      Pages 91-102

      On the Use of Variable Complementarity for Feature Selection in Cancer Classification

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      Pages 103-114

      Comparison of Neural Network Optimization Approaches for Studies of Human Genetics

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      Pages 115-126

      Obtaining Biclusters in Microarrays with Population-Based Heuristics

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      Pages 127-137

      Multiple Sequence Alignment Based on Set Covers

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      Pages 138-148

      A Methodology for Determining Amino-Acid Substitution Matrices from Set Covers

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      Pages 149-158

      Multi-Objective Evolutionary Algorithm for Discovering Peptide Binding Motifs

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      Pages 159-171

      Mining Structural Databases: An Evolutionary Multi-Objetive Conceptual Clustering Methodology

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      Pages 172-183

      Optimal Selection of Microarray Analysis Methods Using a Conceptual Clustering Algorithm

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      Pages 184-195

      Microarray Probe Design Using ε-Multi-Objective Evolutionary Algorithms with Thermodynamic Criteria

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      Pages 196-207

      An Algorithm for the Automated Verification of DNA Supercontig Assemblies

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      Pages 208-220

      From HP Lattice Models to Real Proteins: Coordination Number Prediction Using Learning Classifier Systems

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      Pages 221-230

      Conditional Random Fields for Predicting and Analyzing Histone Occupancy, Acetylation and Methylation Areas in DNA Sequences

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