Skip to main content
SpringerLink
Log in
Book cover

Computational Methods in Systems Biology

10th International Conference, CMSB 2012, London, UK, October 3-5, 2012, Proceedings

  • Conference proceedings
  • © 2012
Download book PDF

Overview

Editors:
  1. David Gilbert

    1. School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, UK

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

  2. Monika Heiner

    1. Computer Science Institute, University of Technology, Cottbus, Germany

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

  • Fast conference proceedings
  • State-of-the-art report
  • Up to date results

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 7605)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: CMSB 2012.

Buy print copy

Softcover Book USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Table of contents (28 papers)

  1. Front Matter

    Download chapter PDF

  2. Invited Talks

    1. Differential and Integral Views of Gene-Phenotype Relations: A Systems Biological Insight

      • Denis Noble
      Pages 1-1
      Download chapter PDF

    2. Resolving the Three-Dimensional Histology of the Heart

      • Matthew Gibb, Rebecca A. B. Burton, Christian Bollensdorff, Carlos Afonso, Tahir Mansoori, Ulrich Schotten et al.
      Pages 2-16
      Download chapter PDF

    3. Bimodal Protein Distributions in Heterogeneous Oscillating Systems

      • Maciej Dobrzyński, Dirk Fey, Lan K. Nguyen, Boris N. Kholodenko
      Pages 17-28
      Download chapter PDF

  3. Regular Papers

    1. Expressive Statistical Model Checking of Genetic Networks with Delayed Stochastic Dynamics

      • Paolo Ballarini, Jarno Mäkelä, Andre S. Ribeiro
      Pages 29-48
      Download chapter PDF

    2. Symmetry-Based Model Reduction for Approximate Stochastic Analysis

      • Kirill Batmanov, Celine Kuttler, Francois Lemaire, Cédric Lhoussaine, Cristian Versari
      Pages 49-68
      Download chapter PDF

    3. Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum

      • Laura Bennett, Artem Lysenko, Lazaros G. Papageorgiou, Martin Urban, Kim Hammond-Kosack, Chris Rawlings et al.
      Pages 69-86
      Download chapter PDF

    4. Predicting Phenotype from Genotype through Automatically Composed Petri Nets

      • Mary Ann Blätke, Monika Heiner, Wolfgang Marwan
      Pages 87-106
      Download chapter PDF

    5. A Simple Model to Control Growth Rate of Synthetic E. coli during the Exponential Phase: Model Analysis and Parameter Estimation

      • Alfonso Carta, Madalena Chaves, Jean-Luc Gouzé
      Pages 107-126
      Download chapter PDF

    6. Multi-objective Optimisation, Sensitivity and Robustness Analysis in FBA Modelling

      • Jole Costanza, Giovanni Carapezza, Claudio Angione, Pietro Liò, Giuseppe Nicosia
      Pages 127-147
      Download chapter PDF

    7. Analysis of Modular Organisation of Interaction Networks Based on Asymptotic Dynamics

      • Franck Delaplace, Hanna Klaudel, Tarek Melliti, Sylvain Sené
      Pages 148-165
      Download chapter PDF

    8. Concretizing the Process Hitting into Biological Regulatory Networks

      • Maxime Folschette, Loïc Paulevé, Katsumi Inoue, Morgan Magnin, Olivier Roux
      Pages 166-186
      Download chapter PDF

    9. Abstraction of Graph-Based Models of Bio-molecular Reaction Systems for Efficient Simulation

      • Ibuki Kawamata, Nathanael Aubert, Masahiro Hamano, Masami Hagiya
      Pages 187-206
      Download chapter PDF

    10. Parameter Identification and Model Ranking of Thomas Networks

      • Hannes Klarner, Adam Streck, David Šafránek, Juraj Kolčák, Heike Siebert
      Pages 207-226
      Download chapter PDF

    11. Investigating Co-infection Dynamics through Evolution of Bio-PEPA Model Parameters: A Combined Process Algebra and Evolutionary Computing Approach

      • David Marco, Erin Scott, David Cairns, Andrea Graham, Judi Allen, Simmi Mahajan et al.
      Pages 227-246
      Download chapter PDF

    12. Population Dynamics P Systems on CUDA

      • Miguel A. Martínez-del-Amor, Ignacio Pérez-Hurtado, Adolfo Gastalver-Rubio, Anne C. Elster, Mario J. Pérez-Jiménez
      Pages 247-266
      Download chapter PDF

    13. Approximate Bisimulations for Sodium Channel Dynamics

      • Abhishek Murthy, Md. Ariful Islam, Ezio Bartocci, Elizabeth M. Cherry, Flavio H. Fenton, James Glimm et al.
      Pages 267-287
      Download chapter PDF

    14. Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control

      • Aurélien Naldi, Pedro T. Monteiro, Claudine Chaouiya
      Pages 288-306
      Download chapter PDF

    15. Sequence Dependent Properties of the Expression Dynamics of Genes and Gene Networks

      • Ilya Potapov, Jarno Mäkelä, Olli Yli-Harja, Andre Ribeiro
      Pages 307-321
      Download chapter PDF

    16. Simulating Insulin Infusion Pump Risks by In-Silico Modeling of the Insulin-Glucose Regulatory System

      • Sriram Sankaranarayanan, Georgios Fainekos
      Pages 322-341
      Download chapter PDF
Back to top

Other volumes

  1. Computational Methods in Systems Biology

Keywords

About this book

This book constitutes the thoroughly refereed conference proceedings of the 10th International Conference on Computational Methods in Systems Biology, CMSB 2012, held in London, UK, during October 3-5, 2012. The 17 revised full papers and 8 flash posters presented together with the summaries of 3 invited papers were carefully reviewed and selected from 62 submissions. The papers cover the analysis of biological systems, networks, and data ranging from intercellular to multiscale. Topics included high-performance computing, and for the first time papers on synthetic biology.

Editors and Affiliations

  • School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, UK

    David Gilbert

  • Computer Science Institute, University of Technology, Cottbus, Germany

    Monika Heiner

Bibliographic Information

Publish with us

Policies and ethics

Back to top

Search

Navigation