Abstract
In the memory of Prof. Ing. Ladislav Valko, DrSc. (1930–2013) A room-temperature synthesis of copper(II) 2-pyridylmethanolate tetrahydrate, [CuL2] · 4H2O, with nearly quantitative yields with its structure redetermined at 213 K is presented. In agreement with the X-ray structure data, the DFT quantum-chemical calculations confirmed the planar structure of CuL2 (C 2h symmetry). The measured IR and Raman spectra were interpreted using the DFT calculations and some erroneous assignments in the previous studies have been corrected.
Similar content being viewed by others
References
Antonioli, B., Bray, D. J., Clegg, J. K., Jolliffe, K. A., Gloe, K., Gloe, K., & Lindoy, L. F. (2007). Proton and anion control of framework complexity in copper(II) complex structures derived from 2-(hydroxymethyl)pyridine. Polyhedron, 26, 673–678. DOI: 10.1016/j.poly.2006.08.031.
Arenas, J. F., Tocón, I. L., Otero, J. C., & Marcos, J. I. (1997). Vibrational spectrum of 2-methylpyridine. Journal of Molecular Structure, 410, 443–446. DOI: 10.1016/s0022-2860(96)09699-8.
Bacsa, J., Zhao, H. H., & Dunbar, K. R. (2004). Bis(pyridin-2-ylmethanolato-κ 2 N,O)bis(trifluoroacetato)nickel(II). Acta Crystallographica Section E: Structure Reports Online, 60, m1040–m1042. DOI: 10.1107/s160053680401565x.
Bauschlicher, C. W., Jr., Langhoff, S. R., Patridge, H., & Barnes, L. A. (1989). Theoretical-studies of the first- and second-row transition-metal methyls and their positiveions. Journal of Chemical Physics, 91, 2399–2411. DOI: 10.1063/1.456998.
Bouwman, E., Bolcar, M. A., Libby, E., Huffman, J. C., Folting, K., & Christou, G. (1992). Tetranuclear manganese(III)-oxo carboxylate complexes possessing terminal phenoxide or alkoxide ligands. Inorganic Chemistry, 31, 5185–5192. DOI: 10.1021/ic00051a008.
Brechin, E. K., Knapp, M. J., Huffman, J. C., Hendrickson, D. N., & Christou, G. (2000). New hexanuclear and octanuclear iron(III) oxide clusters: octahedral [Fe6O2]14+ species and core isomerism in [Fe8O4]16+ complexes. Inorganica Chimica Acta, 297, 389–399. DOI: 10.1016/s0020-1693(99)00377-1.
Carpenter, J. E., & Weinhold, F. (1988). Analysis of the geometry of the hydroxymethyl radical by the “different hybrids for different spins” natural bond orbital procedure. Journal of Molecular Strucure: THEOCHEM, 169, 41–62.
Chantry, G. W. (1971). Polarizability theory for the Raman effect. In A. Anderson (Ed.) The Raman effect (Vol. 1, pp. 49–94). New York, NY, USA: Marcel Dekker.
Cheng, S. C., & Wei, H. H. (2002). Structure, magnetic properties and catecholase activity study of oxo-bridged dinuclear copper(II) complexes. Inorganica Chimica Acta, 340, 105–113. DOI: 10.1016/s0020-1693(02)01059-9.
Draeger, J. A. (1983). Methylpyridines: Vibrational assignments and an approximate force field. Spectrochimica Acta Part A: Molecular Spectroscopy, 39, 809–825. DOI: 10.1016/0584-8539(83)80022-1.
Escuer, A., Font-Bardía, M., Kumar, S. B., Solans, X., & Vicente, R. (1999). Two new nickel(II) cubane compounds derived from pyridine-2-methoxide (Pym): {Ni4(Pym)4Cl4 (CH3OH)4} and {Ni4(Pym)4(N3)4(CH3OH)4}. Crystal structures and magnetic properties. Polyhedron, 18, 909–914. DOI: 10.1016/s0277-5387(98)00378-7.
Farrugia, L. J. (1997). ORTEP-3 for Windows — a version of ORTEP-III with a Graphical User Interface (GUI). Journal of Applied Crystallography, 30, 565–565. DOI: 10.1107/s0021889897003117.
Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Montgomery, J. A., Vreven, T., Kudin, K. N., Burant, J. C., Millam, J. M., Iyengar, S. S., Tomasi, J., Barone, V., Mennucci, B., Cossi, M., Scalmani, G., Rega, N., Petersson, G. A., Nakatsuji, H., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Klene, M., Li, X., Knox, J. E., Hratchian, H. P., Cross, J.B., Adamo, C., Jaramillo, J., Gomperts, R., Stratmann, R. E., Yazyev, O., Austin, A. J., Cammi, R., Pomelli, C., Ochterski, W. J., Ayala, P. Y., Morokuma, K., Voth, G. A., Salvdor, P., Dannenberg, J. J., Zakrzewski, V. G., Dapprich, S., Daniels, A. D., Strain, M. C., Farkas, O., Malick, D. K., Rabuck, A. D., Raghavachari, K., Foresman, J. B., Ortiz, J. V., Cui, Q., Baboul, A. G., Clifford, S., Cioslowski, J., Stefanov, B. B., Liu, G., Liashenko, A., Piskorz, P., Komaromi, I., Maring, R. L., Fox, D. J., Keith, T., Al-Laham, M. A., Peng, C. Y., Nanayakkara, A., Challacombe, M., Gill, P. M. W., Johnson, B., Chen, W., Wong, M. W., Gonzalez, C., & Pople, J. A. (2003). Gaussian 03, revision C1 [computer software]. Pittsburgh, PA, USA: Gaussian.
Gerber, T. I. A., Luzipo, D. G., & Mayer, P. (2005). The coordination of 2-(hydroxymethyl)pyridine to oxorhenium (V). Synthesis and crystal structure of [ReOCl(C5H4N-CH2O)2]. Journal of Chemical Crystallography, 35, 39–41. DOI: 10.1007/s10870-005-1152-9.
Hamamci, S., Yilmaz, V. T., & Thöne, C. (2004). Cisdiaquabis[2-(hydroxymethyl)pyridine]nickel(II) dichloride. Acta Crystallographica Section E: Structure Reports Online, 60, m6–m8. DOI: 10.1107/s1600536803026862.
He, F., & Liu, D. (2005). Bis[2-(hydroxymethyl)pyridine-κ 2 N,O]dinitratocopper(II). Acta Crystallographica Section E: Structure Reports Online, 61, m1350–m1351. DOI: 10.1107/s1600536805018696.
Hoang, N. N., Valach, F., Dunaj-Jurčo, M., & Melník, M. (1992). Structure of bis(salicylato)bis(2-pyridylmethanol) copper(II). Acta Crystallographica Section C: Crystal Structure Communications, 48, 443–445. DOI: 10.1107/s0108270191009897.
Ito, M., & Onaka, S. (2004). Versatility of pyridine-2-methanol as a chelating ligand toward a manganese ion: synthesis and X-ray structural analysis on some manganese-pyridine-2-methanol derivatives. Inorganica Chimica Acta, 357, 1039–1046. DOI: 10.1016/j.ica.2003.09.028.
Janiak, C. (2000). A critical account on π-π stacking in metal complexes with aromatic nitrogen-containing ligands. Journal of the Chemical Society: Dalton Transactions, 2000, 3885–3896. DOI: 10.1039/b003010o.
Jomova, K., Vondrakova, D., Lawson, M., & Valko, M. (2010). Metals, oxidative stress and neurodegenerative disorders. Molecular and Cellular Biochemistry, 345, 91–104. DOI: 10.1007/s11010-010-0563-x.
Jomova, K., & Valko, M. (2011). Advances in metal-induced oxidative stress and human disease. Toxicology, 283, 65–87. DOI: 10.1016/j.tox.2011.03.001.
Jomova, K., Baros, S., & Valko, M. (2012). Redox active metalinduced oxidative stress in biological systems. Transition Metal Chemistry, 37, 127–134. DOI: 10.1007/s11243-012-9583-6.
Klots, T. D. (1995). Vibrational spectra of indene. Part 4. Calibration, assignment and ideal-gas thermodynamics. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 51, 2307–2324. DOI: 10.1016/0584-8539(95)01431-4.
Klots, T. D. (1998). Raman vapor spectrum and vibrational assignment for pyridine. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 54, 1481–1498. DOI: 10.1016/s1386-1425(98)00054-7.
Krishnan, R. B., Binkley, J. S., Seeger, R., & Pople, J. A. (1980). Self-consistent molecular orbital methods. XX. A basis set for correlated wave functions. Journal of Chemical Physics, 72, 650. DOI: 10.1063/1.438955.
Lah, N., Leban, I., & Clérac, R. (2006). The assembly of dinuclear alkoxido-bridged CuII halide complexes of pyridine alcohols to form tetranuclear and polynuclear compounds: Synthesis, structure and magnetic properties. European Journal of Inorganic Chemistry, 2006, 4888–4894. DOI: 10.1002/ejic.200600596.
Maroszová, J., Stachová, P., Vasková, Z., Valigura, D., & Koman, M. (2006). (3,5-Dinitrobenzoato-κO)bis[(2-pyridyl)-methanol-κ 2 N,O]copper(II) 3,5-dinitrobenzoate. Acta Crystallographica Section E: Structure Reports Online, 62, m109–m110. DOI: 10.1107/s1600536805041310.
Martos-Calvente, R., de la Peña O’Shea, V. A., Campos-Martin, J. M., Fierro, J. L. G., & Gutiérrez-Puebla, E. (2004). Synthesis of bis[N,O-{2′-pyridyl-methanolate}]dioxomolybdenum(VI) epoxidation catalyst and novel crystal structure derived from X-ray diffraction and DFT calculations. Journal of Molecular Catalysis A: Chemical, 214, 269–272. DOI: 10.1016/j.molcata.2003.12.023.
McLean, A. D., & Chandler, G. S. (1980). Contracted Gaussian basis sets for molecular calculations. I. Second row atoms, Z = 11–18. Journal of Chemical Physics, 72, 5639. DOI: 10.1063/1.438980.
Moncol, J., Kalinakova, B., Svorec, J., Kleinova, M., Koman, M., Hudecova, D., Melník, M., Mazúr, M., & Valko, M. (2004a). Spectral properties and bio-activity of copper(II) clofibriates, part III: Crystal structure of Cu(clofibriate)2(2-pyridylmethanol)2, Cu(clofibriate)2 (4-pyridylmethanol)2 (H2O) dihydrate and Cu2(clofibriate)4(N,N-diethylnicotinamide)2. Inorganica Chimica Acta, 357, 3211–3222. DOI: 10.1016/j.ica.2004.03.043.
Moncol, J., Mudra, M., Lönnecke, P., Koman, M., & Melník, M. (2004b). Copper(II) halogenopropionates: Lowtemperature crystal and molecular structure of bis(2,2-dichloropropionato)-di(methyl-3-pyridylcarbamate)copper (II) and bis(2-bromopropionato)-di (2-pyridylmethanol)copper(II). Journal of Coordination Chemistry, 57, 1065–1078. DOI: 10.1080/00958970412331281836.
Onaka, S., Hong, L., Ito, M., Sunahara, T., Imai, H., & Inoue, K. (2005). Rational synthesis and X-ray structural study of manganese-pyridine-alcohol derivatives. Journal of Coordination Chemistry, 58, 1523–1530. DOI: 10.1080/00958970500078619.
Partal, F., Fernández-Gómez, M., López-González, J. J., Navarro, A., & Kearley, G. J. (2000). Vibrational analysis of the inelastic neutron scattering spectrum of pyridine. Chemical Physics, 261, 239–247. DOI: 10.1016/s0301-0104(00)00233-0.
Peng, C. Y., Ayala, P. Y., Schlegel, H. B., & Frisch, M. J. (1996). Using redundant internal coordinates to optimize equilibrium geometries and transition states. Journal of Computational Chemistry, 17, 49–56. DOI: 10.1002/(sici)1096-987x(19960115)17:1〈49::aid-jcc5〉3.3.co;2.
Polavarapu, P. L. (1990). Ab initio vibrational Raman and Raman optical activity spectra. The Journal of Physical Chemistry, 94, 8106–8112. DOI: 10.1021/j100384a024.
Pongor, G., Pulay, P., Fogarasi, G., & Boggs, J. E. (1984). Theoretical prediction of vibrational spectra. 1. The inplane force field and vibrational spectra of pyridine. Journal of the American Chemical Society, 106, 2765–2769. DOI: 10.1021/ja00322a006.
Púčeková-Repická, Z., Moncol, J., Valigura, D., Lis, T., Korabik, M., Melník, M., Mroziński, J., & Mazúr, M. (2007). Synthesis, structure, spectral and magnetic properties of 4-methoxy- and 3-methylsalicylatocopper(II) complexes with 2-pyridylmethanol. Journal of Coordination Chemistry, 60, 2449–2460. DOI: 10.1080/00958970701272565.
Reed, A. E., Curtiss, L. A., & Weinhold, F. (1988). Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint. Chemical Reviews, 88, 899–926. DOI: 10.1021/cr00088a005.
Roeges, N. P. G. (1994). Guide to the complete interpretation of infrared spectra of organic structures. Chichester, UK: Wiley.
Rochon, F. D., Melanson, R., & Kong, P. C. (1997). Synthesis and crystal structures of oxo pyridinemethanolate technetium(V) complexes. Inorganica Chimica Acta, 254, 303–307. DOI: 10.1016/s0020-1693(96)05176-6.
Scott, A. P., & Radom, L. (1996). Harmonic vibrational frequencies: An evaluation of Hartree-Fock, Møller-Plesset, quadratic configuration interaction, density functional theory and semiempirical scale factors. The Journal of Physical Chemistry, 100, 16502–16513. DOI: 10.1021/jp960976r.
Shindo, H., Walter, J. L., & Hooper, R. J. (1965). An infra-red study of bis-(2-pyridylcarbinolo)-chelates. Journal of Inorganic and Nuclear Chemistry, 27, 871–878. DOI: 10.1016/0022-1902(65)80449-3.
Suzuki, Y., Tomizawa, H., & Miki, E. (1999). Reaction of hydrous nitrosylruthenium trichloride with 2-pyridinemethanol. Inorganica Chimica Acta, 290, 36–43. DOI: 10.1016/s0020-1693(99)00109-7.
Tesmer, M., Müller, B., & Vahrenkamp, H. (1997). Oligonuclear zinc complexes of 2-pyridylmethanol. Chemical Communications, 1997, 721–722. DOI: 10.1039/a607985g.
Wachters, A. J. H. (1970). Gaussian basis set for molecular wavefunctions containing third-row atoms. The Journal of Chemical Physics, 52, 1033. DOI: 10.1063/1.1673095.
Yang, E. C., Wernsdorfer, W., Hill, S., Edwards, R. S., Nakano, M., Maccagnano, S., Zakharov, L. N., Rheingold, A. L., Christou, G., & Hendrickson, D. N. (2003a). Exchange bias in Ni4 single-molecule magnets. Polyhedron, 22, 1727–1733. DOI: 10.1016/s0277-5387(03)00149-9.
Yang, E. C., Harden, N., Wernsdorfer, W., Zakharov, L. N., Brechin, E. K., Rheingold, A. L., Christou, G., & Hendrickson, D. N. (2003b). Mn4 single-molecule magnets with a planar diamond core and S = 9. Polyhedron, 22, 1857–1863. DOI: 10.1016/s0277-5387(03)00173-6.
Yilmaz, V. T., Guney, S., Andac, O., & Harrison, W. T. A. (2002a). Bis(2-pyridylmethanol)bis(saccharinato)zinc(II) and -cadmium(II) at 120 K: Three-dimensional structures containing both N-and O-coordinated ambidentate saccharinate ligands. Acta Crystallographica Section C: Crystal Structure Communications, 58, m427–m430. DOI: 10.1107/s0108270102010491.
Yilmaz, V. T., Guney, S., Andac, O., & Harrison, W. T. A. (2002b). Different coordination modes of saccharin in the metal complexes with 2-pyridylmethanol: Synthesis, spectroscopic, thermal and structural characterization. Polyhedron, 21, 2393–2402. DOI: 10.1016/s0277-5387(02)01211-1.
Yilmaz, V. T., Hamamci, S., & Thöne, C. (2004). Cobalt(II) complexes of 2-methanol-, 2,6-dimethanol- and 2-ethanolpyridines: Syntheses, spectroscopic, thermal and structural characterizations of [Co2(µ-Cl)2(mpy)4]Cl2 · 2H2O, [Co(dmpy)2]Cl2 and [Co(Cl)4](Hpyet)2 (mpy = 2-methanolpyridine; dmpy = 2,6-dimethanolpyridine and Hpyet = 2-ethanolpyridinium). Polyhedron, 23, 841–848. DOI: 10.1016/j.poly.2003.12.007.
Yoo, J., Yamaguchi, A., Nakano, M., Krzystek, J., Streib, W. E., Brunel, L. C., Ishimoto, H., Christou, G., & Hendrickson, D. N. (2001). Mixed-valence tetranuclear manganese singlemolecule magnets. Inorganic Chemistry, 40, 4604–4616. DOI: 10.1021/ic0012928.
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Rights and permissions
About this article
Cite this article
Gatial, A., Múdra, M., Moncoľ, J. et al. Structure and vibrational spectra of copper(II) 2-pyridylmethanolate tetrahydrate. Chem. Pap. 68, 940–949 (2014). https://doi.org/10.2478/s11696-014-0539-5
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.2478/s11696-014-0539-5