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Development and validation of an estuarine biotic integrity index

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Abstract

We tested hypotheses about how estuarine fish assemblages respond to habitat degradation and then integrated these responses into an overall index, the Estuarine Biotic Integrity Index (EBI), which summarized observed changes. Fish assemblages (based on trawl catches) and habitat quality were measured monthly or biweekly at nine sites in two estuaries from March 1988 to June 1990. Submerged aquatic vegetation habitats were classified as low or medium quality based on year-round measurements of chemical and physical characteristics (phytoplankton blooms; macroalgae; dissolved oxygen; nutrients; dredged channels). We tested 15 metrics and selected 8 for inclusion in the EBI: total number of species, dominance, fish abundance (number or biomass), number of nursery species, number of estuarine spawning species, number of resident species, proportion of benthic-associated fishes, and proportion abnormal or diseased. Fish assemblages in low-quality sites had lower number of species, density, biomass, and dominance compared with medium-quality sites. Fish abundance peaked in July and August, and was lowest in January to March. The seasonal cycle in low-quality sites was damped compared with medium-quality sites. Abundances of fishes using estuaries as a spawning and nursery area and of benthic species were lower in low-quality sites compared to medium-quality sites. The individual metrics and the overall index correlated with habitat degradation. The EBI based on biomass did not do better than the EBI based on number, indicating that the extra effort to obtain biomass may not be warranted. We suggest the EBI is a useful indicator of estuarine ecosystem status because it reflects the relationship between anthropogenic alterations in estuarine ecosystems and the status of higher trophic levels.

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Literature Cited

  • Abacus Concepts 1992. Statview 4.0. Berkeley, California.

  • Amos, W. H. andS. H. Amos. 1985. Atlantic and Gulf Coasts. Alfred Knopf, New York.

    Google Scholar 

  • Angermeir, P. L. andJ. R. Karr. 1986. Applying an index of biotic integrity based on stream-fish communities: Considerations in sampling and interpretation.North American Journal of Fisheries Management 6:418–429.

    Article  Google Scholar 

  • Ayvazian, S. G., L. A. Deegan, andJ. T. Finn. 1992. Comparison of habitat use by estuarine fish assemblages in the Acadian and Virginian biogeographic regions.Estuaries 15:368–383.

    Article  Google Scholar 

  • Batiuk, R. A., R. J. Orth, K. Moore, R. Dennison, J. Stevenson, L. Staver, V. Carter, N. Rybicki, R. Hickman, S. Kollar, S. Biever andP. Heasly. 1992. Chesapeake Bay submerged aquatic vegetation habitat requirements and restoration targets: A technical synthesis. United States Environmental Protection Agency, for the Chesapeake Bay Program, Annapolis, Maryland.

    Google Scholar 

  • Berkman, H. E., C. F. Rabeni andT. P. Boyle. 1986. Biomonitors of stream quality in agricultural areas: Fish vs. inverbrates.Environmental Management 10:413–419.

    Article  Google Scholar 

  • Bigelow, H. B. andW. C. Schroeder. 1953. Fishes of the Gulf of Maine. United States Government Printing Office, Washington, D.C.

    Google Scholar 

  • Böhlke, J. E. andC. C. G. Chaplin 1968. Fishes of the Bahamas. Livingston Publishing Co, Wynnewood, Pennsylvania.

    Google Scholar 

  • Bramblett, R. andK. Fausch. 1991. Variable fish communities and the Index of Biotic Integrity in a Western Great Plains River.Transactions American Fisheries Society 120:752–769.

    Article  Google Scholar 

  • Cairns, J., Jr. 1974. Indicator species vs. the concept of community structure as an index of pollution.Water Research Bulletin 10:338–347.

    Google Scholar 

  • Clayton, G., C. Cole, S. Murawski, andJ. Parrish. 1976. Common marine fishes of coastal Massachusetts. University of Massachusetts, Amherst, Massachusetts.

    Google Scholar 

  • Commonwealth of Massachusetts. 1986. Waquoit Bay National Estuarine Research Reserve. Final Management Plans. Department of Environmental Management, Boston, Massachusetts.

    Google Scholar 

  • Costa, J. F. 1988. Eelgrass in Buzzards Bay: Distribution, production, and historical changes in abundance, United States Environmental Protection Agency Technicla Report, EPA 503/4-88-002. Boston, Massachusetts.

  • Costa, J. E., B. L., Howes, D. Aubry, A. Giblin, M. Frimpter, D. Janik, N. MacCaffey, and I. Valiela. 1992. Managing nitrogen inputs in sensitive embayments: Technical basis for a management strategy adopted for Buzzards Bay. Buzzards Bay Project Technical Report Series, Draft Report Marion, Massachusetts.

  • Costa, J. E., B. Howes, A. Giblin, andI. Valiela. 1992. Monitoring nitrogen and indicators of nitrogen loading to support management action in Buzzards Bay, p. 499–531.In D. H. McKenzie, D. E. Hylact, and V. Janet McDonald (eds.) Ecological Indicators. Elsevier Press, London, England.

    Google Scholar 

  • Gouch, J. andJ. Fournier. 1993. Pathobiology of Marine and Estuarine Organisms. CRC Press, Boca Raton, Florida.

    Google Scholar 

  • Deegan, L. A. and R. N. Buchsbaum. In press.In: R. N. Buchsbaum, W. E. Robinson, and J. Pederson (eds.), The Decline of Fisheries Resources in New England: Evaluating the Impact of Overfishing, Contamination and Habitat Degradation. Massachusetts Bays Program. University of Massachusetts Press, Boston, Massachusetts.

  • Deegan, L. A. and J. W. Day, Jr. 1984. Estuarine fishery habitat requirements, p, 315–336.In B. J. Copeland, K. Hart, N. Davis, and S. Friday (eds.), Research for Managing the Nation's Estuaries: Proceedings of a Conference in Raleigh, North Carolina, March 13–15, 1984. University of North Carolina Sea Grant Publication. UNC-SG-84-08.

  • Deegan, L. A., J. W. Day, Jr.,C. A. S. Hall, W. M. Kemp, andA. Yanez-Arancibia. 1989. Nekton, the free-swimming consumers, p. 377–437.In J. W. Day, Jr. C. A. S. Hall, W. M. Kemp, and A. Yanez-Arancibia (eds.), Estuarine Ecology, John Wiley & Sons, Inc., New York.

    Google Scholar 

  • Deegan, L. A., J. T. Finn, andS. G. Ayvazian. 1991. Comparison of young-of-the-year nekton growth and survival in seagrass beds and marshes. Final Report for National Oceanic and Atmospheric Administration, grant NA88AA-D-CZ006, National Oceanic and Atmospheric Administration, Amherst, Massachusetts.

    Google Scholar 

  • Deegan, L. A., J. T. Finn, S. G. Ayvazian, andC. Ryder. 1993. Feasibility and application of the Index of Biotic Integrity to Massachusetts estuaries (EBI). Final Project Report to Massachusetts Executive Office of Environmental Affairs, Department of Environmental Protection, North Grafton, Massachusetts.

    Google Scholar 

  • Deegan, L. A., J. T. Finn, S. G. Ayvazian, and C. Ryder. 1992a. The application of the Index of Biotic Intergrity to Massachusetts estuaries. Final Data Report to Massachusetts Department of environmental Protection, Amherst, Massachusetts.

  • Deegan, L. A., J. T. Finn H. E. Geyer, andS. G. Aywazian. 1992b. The influence of macroalgae on fisheries production. Final Report to National Oceanic and Atmospheric Administration for grant NA90AA-H-CZ187. National Oceanic and Atmospheric Administration. Woods Hole, Massachusetts.

    Google Scholar 

  • Deegan, L. A., S. E. Saucerman, andD. Basler. 1990. Changes in the Waquoit Bay fish community over a twenty-year period, p. 37–38.In A. E. Giblin (ed.), New England Salt Pond Data Book. Technical Report #WHOI-90-21, CRC-90-2, Woods Hole Oceanographic Institution, Coastal Research Center, Woods Hole, Massachusetts.

    Google Scholar 

  • Deegan, L. A. andB. A. Thompson. 1985. The ecology of fish communities in the Missippi River deltaic plain, p. 35–56.In A. Yanez-Arancibia (ed.), Fish Community Ecology in Estuaries and Coastal Lagoons: Towards and Ecosystem Integration. UNAM-ICML Publishers, Ciudad Universitaria, Mexico.

    Google Scholar 

  • Dennison, W. C., R. J. Orth, K. A. Moore, J. C. Stevenson, V. Carter, S. Kollar, P. W. Bergstrom, andR. A. Batiuk. 1993. Assessing water quality with submersed aquatic vegetation.BioScience 43:86–94.

    Article  Google Scholar 

  • Fausch, K. D., J. R. Karr, andP. B. Yant. 1984. Regional application of an index of biotic integrity based on stream-fish communities.Transactions of the American Fisheries Society 113: 39–55.

    Article  Google Scholar 

  • Fausch, K. D., J. Lyons, J. R. Karr, andP. L. Angermeir 1990. Fish communities as indicators of environmental degradation, p. 123–144.In S. Marshall Adams, (ed.), Biological Indicators of Stress in Fish. American Fisheries Society Symposium, 8, American Fisheries Society Bethesda, Maryland.

    Google Scholar 

  • Ford, J. 1989. The effects of chemical stress on aquatic species composition and community structure, p. 99–144.In S. A. Levin, M. A. Harwell, J. R. Kelly, and K. D. Kimball (eds.), Ecotoxicology: Problems and Approaches. Springer-Verlag, New York.

    Google Scholar 

  • Fore, L. S., J. R. Karr, andL. L. Conquest. 1994. Statistical properties of an index of biological integrity used to evaluate water resources.Canadian Journal of Fisheries and Aquatic Science 51:1077–1087.

    Article  Google Scholar 

  • Funderburk, S. L., J. Mihursky, S. J. Jordan, andD. Riley. 1991. Habitat Requirements for Chesapeake Bay Living Resources. Maryland Department of Natural Resources, Annapolis, Maryland.

    Google Scholar 

  • Gerritsen, J. 1995. Additive biological indices for resource management.Journal North American Benthological Society 14: 451–457.

    Article  Google Scholar 

  • Grosselein, M. D., andT. R. Azarovitz. 1982. Fish distribution. Marine Ecosystems Analysis Programs. New York Bight Atlas Monograph, 15. New York Sea Grant, Albany, New York.

    Google Scholar 

  • Haedrich, R. L., andS. O. Haedrich. 1974. A seasonal survey of the fishes in the Mystic River, a polluted estuary in downtown Boston, Massachusetts.Estuarine and Coastal Marine Science 2:59–73.

    Article  Google Scholar 

  • Head, P. C. 1985. Practical Estuarine Chemistry. A Handbook. Cambridge University Press, Cambridge, England.

    Google Scholar 

  • Heck, K. L., Jr. andL. B. Crowder. 1991. Habitat structure and predator-prey interactions in vegetated aquatic systems, p. 281–299.In S. S. Bell, E. D. McCoy, and H. R. Mushinsky (eds.), Habitat Structure, the Physical Arrangement of Objects in Space. Chapman and Hall, New York.

    Google Scholar 

  • Karr, J. R. 1981. Assessment of biotic integrity using fish communities.Fisheries 6:21–27.

    Article  Google Scholar 

  • Karr, J. R. 1991. Biological integrity: A long-neglected aspect of water resource management.Ecological Application 1:66–85.

    Article  Google Scholar 

  • Karr, J. R. andD. R. Dudley. 1981. Ecological perspective on water quality goals.Environmental Management 5:55–68.

    Article  Google Scholar 

  • Karr, J. R., K. D. Fausch, P. L. Angermeir, P. R. Yant, and I. J. Schlosser. 1986. Assessing biological integrity in running waters: A method and its rationale. Illinois Natural History Survey, Special Publication 5, Champaign, Illinois.

  • Kerans, B. L. andJ. R. Karr. 1994. A benthic index of biotic integrity (B-IBI) for rivers of the Tennessee Valley.Ecological Applications 4:768–785.

    Article  Google Scholar 

  • Leonard, P. M. andD. J. Orth. 1986. Application and testing of an index of biotic integrity in small, coolwater streams.Transactions of the American Fisheries Society 115:401–415.

    Article  Google Scholar 

  • Magurran, A. 1988. Ecological diversity and its measurement. Princeton University Press, Princeton, New Jersey.

    Google Scholar 

  • Mikkelson, G. M. 1993. How do food webs fall apart? A study of changes in trophic structure during relaxation on habitat fragments.Oikos 67:539–547.

    Article  Google Scholar 

  • Miller, D. L., P. M. Leonard, R. M. Hughes, J. R. Karr, P. B. Moyle, L. H. Schrader, B. A. Thompson, R. A. Daniels, K. D. Fausch, G. A. Fitzhugh, J. R. Gammon, D. B. Haliwell, P. L. Angermeir, andD. J. Orth. 1988. Regional applications of an index of biotic integrity for use in water resource management.Fisheries 13:12–20.

    Article  Google Scholar 

  • Morris, L. J. andD. A. Tomasko (eds.) 1993. Proceedings and conclusions of workshops on Submerged Aquatic Vegetation Initiative and Photosynthetically Active Radiation. Special publication SJ93-SP13. St. Johns River Water Management District, Palatka, Florida.

    Google Scholar 

  • Murchelano, R. A. andR. E. Wolke. 1985. Epizootic carcinoma in the winter flounder,Pseudopleuronectes americanus.Science 228:587–589.

    Article  Google Scholar 

  • Nelson, D. A., J. E. Miller, D. Rusanowsky, R. A. Sennefelder, G. R. Mercaldo-Allen, C. Kuropat, E. Gould, F. P. Thurberg, andA. Calabrese. 1991. Comparative reproductive success of winter flounder in Long Island Sound: A 3-year study (biology, biochemistry, and chemistry)Estuaries 14:318–331.

    Article  CAS  Google Scholar 

  • NOAA/EPA Team on Near Coastal Waters. 1989. Susceptibility of East Coast estuaries to nutrient-discharges: Passamaquoddy Bay to Chesapeake Bay. National Oceanic and Atmospheric Administration, Rockville, Maryland.

    Google Scholar 

  • Paller, M., M. J. Reichert, andJ. M. Dean. 1996. Use of fish communities to assess environmental impacts in South Carolina coastal plain streams.Transactions of the American Fisheries Society 125:633–644.

    Article  Google Scholar 

  • Phillips, R. C. andC. P. McRoy (eds) 1990. Handbook of Seagrass Biology: An Ecosystem Perspective. Garland STPM Press, New York.

    Google Scholar 

  • Plafkin, J. L. 1989. Water quality-based controls and ecosystem recovery, p. 87–96.In J. Cairns (ed.), Rehabilitating Damaged Ecosystems. Volume II. CRC Press, Boca Raton, Florida.

    Google Scholar 

  • Pontasch, K. W., B. R. Niederlehner andJ. Cairns, Jr. 1989. Comparisons of single-species, microcosm and field responses to a complex effluent.Environmental Toxicology and Chemistry 8:521–532.

    Article  CAS  Google Scholar 

  • Ray, C. G. 1991. Coastal zone biodiversity patterns.BioScience 41:490–498.

    Article  Google Scholar 

  • Robins, C. R., G. C. Ray, T. Douglass andR. Freund. 1986. A Field Guide to Atlantic Coast Fishes of North America. Houghton Mifflin Company, Boston, Massachusetts.

    Google Scholar 

  • Ryder, C. A. 1993. Use of an estuarine index of biotic integrity (EBI) for Buttermilk Bay, a southern New England estuary. M.S. Thesis, University of Massachusetts, Amherst, Massachusetts.

    Google Scholar 

  • Schindler, D. W. 1987. Detecting ecosystem responses to anthropogenic stress.Canadian Journal of Fisheries and Aquatic Sciences 44:6–25.

    Article  CAS  Google Scholar 

  • Scott, W. B. andM. G. Scott. 1988. Atlantic Fishes of Canada. University Toronto Press, Toronto, Canada.

    Google Scholar 

  • Short, F. T. andD. Burdick. 1996. Quantifying eelgrass habitat loss in relation to housing development and nitrogen loading in Waquoit Bay, Massachusetts.Estuaries 19:730–739.

    Article  Google Scholar 

  • Short, F. T., D. Burdick, J. Wolf, andG. Jones. 1993. Eelgrass in estuarine reserves along the east coast. Declines from pollution and disease. National Oceanic and Atmospheric Administration. Coastal Ocean Program, Durham, New Hampshire.

    Google Scholar 

  • Sindermann, C. J. 1994. Quantitative effects of pollution on marine and anadromous fish populations. National Oceanic and Atmospheric Administration Technical Memorandum NMFS-F/NEC-104. Woods Hole, Massachusetts.

  • Steedman, R. J. 1988. Modification and assessment of an index of biotic integrity to quantify stream quality in southern Ontario.Canadian Journal of Fisheries and Aquatic Sciences 45:492–501.

    Article  Google Scholar 

  • Strickland, I. D. H. and T. R. Parson. 1972. A Practical Handbook of Seawater Analysis. Bulletin of the Fisheries Research Board of Canada, No. 167, 2nd Edition Ottawa, Ontario, Canada.

  • Summers, J. K. andV. Engle. 1993. Evaluation of sampling strategies to characterize dissolved oxygen conditions in Gulf of Mexico estuaries.Environmental Monitoring and Assessment 24:219–229.

    Article  CAS  Google Scholar 

  • Taub, F. B. 1987. Indicators of change in natural and human-impacted ecosystems: Status, p. 115–144.In S. Draggan, J. J. Cohrssen, and R. E. Morrison. (eds.), Preserving Ecological Systems: The Agenda for Long-term Research and Development. Praeger, New York.

    Google Scholar 

  • Thayer, G. W., W. J. Kenworth, andM. S. Fonseca. 1984. The ecology of eelgrass meadows of the Atlantic Coast: A community profile. United States Department of the Interior, Washington, D. C. FWS/OBS-84\02

    Google Scholar 

  • Thompson, B. A. and G. R. Fitzhugh. 1986. A use attainability study: An evaluation of fish and macroinvertebrate assemblages of the lower Calcasieu River, Louisiana. Final Report to the Louisiana Department of Environmental Quality. Baton Rouge, Louisiana.

  • Valiela, I., M. Alber, andM. LaMontagne. 1991. Fecal coliform loadings and stocks in Buttermilk Bay, Massachusetts and management implications.Environmental Management 15: 659–674.

    Article  Google Scholar 

  • Valiela, I. andJ. Costa. 1988. Eutrophication of Buttermilk Bay, a Cape Cod coastal embayment: Concentrations of nutrients and watershed nutrient budgets.Environmental Management 12:539–551.

    Article  CAS  Google Scholar 

  • Valiela, I., K. Foreman, M. LaMontagne, D. Hersh, J. Costa, P. Peckol, C. Demeo-Anderson, D. D'Avanzo, M. Babione, C. Sham, J. Brawley andK. Lajtha. 1992. Couplings of watersheds and coastal waters: Sources and consequences of nutrient enrichment in Waquoit Bay.Estuaries 15:443–458.

    Article  CAS  Google Scholar 

  • Weisburg, S. B., J. B. Frithsen, A. F. Holland, J. F. Paul, K. J. Scott, J. K. Summers, H. T. Wilson, R. Valente, D. G. Heimbuch, J. Gerritsen, S. C. Schimmel andR. W. Latimer. 1991. EMAP-estuaries. Virginian Province Environmental Research Laboratory, Narragansett, Rhode Island.

    Google Scholar 

  • Zar, J. 1984. Biostatistical Analysis. Prentice Hall, Englewood Cliffs, New Jersey.

    Google Scholar 

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Deegan, L.A., Finn, J.T., Ayvazian, S.G. et al. Development and validation of an estuarine biotic integrity index. Estuaries 20, 601–617 (1997). https://doi.org/10.2307/1352618

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