Translational Research and Biomarkers

Annals of Surgical Oncology

, Volume 20, Issue 5, pp 1737-1744

Biobanking of Fresh-frozen Human Colon Tissues: Impact of Tissue Ex-vivo Ischemia Times and Storage Periods on RNA Quality

  • Wei-Guang BaoAffiliated withHuman Tissue Bank, Taizhou Hospital of Zhejiang Province, Wenzhou Medical College
  • , Xia ZhangAffiliated withHuman Tissue Bank, Taizhou Hospital of Zhejiang Province, Wenzhou Medical College
  • , Jian-Gang ZhangAffiliated withHuman Tissue Bank, Taizhou Hospital of Zhejiang Province, Wenzhou Medical College
  • , Wen-Jun ZhouAffiliated withHuman Tissue Bank, Taizhou Hospital of Zhejiang Province, Wenzhou Medical College
  • , Tie-Nan BiAffiliated withDepartment of Gastrointestinal Surgery, Taizhou Hospital of Zhejiang Province, Wenzhou Medical College
  • , Jiao-Chen WangAffiliated withDepartment of Pathology, Taizhou Hospital of Zhejiang Province, Wenzhou Medical College
  • , Wei-Hua YanAffiliated withMedical Research Center, Taizhou Hospital of Zhejiang Province, Wenzhou Medical College
  • , Aifen LinAffiliated withHuman Tissue Bank, Taizhou Hospital of Zhejiang Province, Wenzhou Medical CollegeMedical Research Center, Taizhou Hospital of Zhejiang Province, Wenzhou Medical College Email author 

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Abstract

Background

Biobanking plays an important role in translational cancer research. The impact of tissue ex-vivo ischemia time and storage period on RNA integrity is not well documented.

Methods

Fresh-frozen colon tissues were collected in Taizhou Hospital of Zhejiang Province in China since 2004. Fifty-one colon cancer tissues with tumor cell content higher than 70 % and matched normal tissues during four storage periods (less than 15 months, 16–20 months, 21–25 months, and 26–40 months) were chosen to detect RNA quality. Fresh colon cancer tissues from 5 patients were cut into pieces and kept at room temperature or on ice for 0.5, 1, 2, and 4 h before snap freezing. RNA integrity was determined by microcapillary electrophoresis by the RNA integrity number (RIN) algorithm.

Results

Sixty-seven percent of normal colon tissues and 94 % of colon cancer specimens yielded RNA with a RIN of ≥7. Matched colon cancer and normal tissues showed significant difference in RNA quality. RNA remained stable in colon cancer tissues kept at room temperature and on ice for up to 4 h, and long-term storage of banked colon specimens did not negatively influence RNA quality (RNA with RIN of ≥7 banked less than 15 months, 83 %; 16–20 months, 78 %; 21–25 months, 77 %; 26–40 months, 90 %).

Conclusions

Frozen colon tissues yield high-quality RNA in approximately 80 % of specimens. Ex-vivo ischemia times and storage periods did not adversely affect RNA quality. This study showed that standard operation protocols and the maintenance of high-quality tissue repositories were the keys to translational medicine research.