Skip to main content
Log in

Genomic mapping of chromatin proteins by using Daminv modification of an FLP-dependent DamID approach

  • Biochemistry, Biophysics, and Molecular Biology
  • Published:
Doklady Biochemistry and Biophysics Aims and scope Submit manuscript

Abstract

To identify interactions of chromatin proteins with the genome of the cell type of interest that is a part of heterologous tissues and organs of Drosophila, an FLP-dependent DamID approach was recently developed [4], which does not require sorting of cells or nuclei. Here, a modification of this approach, Daminv, is described. The modified approach was validated by generating the binding pattern of the LAM protein, a component of the inner membrane of the nuclear envelope, with the genome of glial cells of the Drosophila larval central brains.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  1. Voss, T.C. and Hager, G.L., Nat. Rev. Genet., 2014, vol. 15, pp. 69–81.

    Article  CAS  PubMed  Google Scholar 

  2. Furey, T.S., Nat. Rev. Genet., 2012, vol. 13, pp. 840–852.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Aughey, G.N. and Southall, T.D., Wiley Interdiscip. Rev. Develop. Biol., 2016, vol. 5, pp. 25–37.

    Article  CAS  Google Scholar 

  4. Pindyurin, A.V., Pagie, L., Kozhevnikova, E.N., et al., Nucleic Acids Res., 2016, vol. 44, pp. 5646–5657.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Futcher, A.B., Yeast, 1988, vol. 4, pp. 27–40.

    Article  CAS  PubMed  Google Scholar 

  6. Bischof, J., Maeda, R.K., Hediger, M., et al., Proc. Natl. Acad. Sci. U.S.A., 2007, vol. 104, pp. 3312–3317.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Van Steensel, B. and Henikoff, S., Nat. Biotechnol., 2000, vol. 18, pp. 424–428.

    Article  PubMed  Google Scholar 

  8. Silies, M., Yuva, Y., Engelen, D., et al., J. Neurosci., 2007, vol. 27, pp. 13130–13139.

    Article  CAS  PubMed  Google Scholar 

  9. Granderath, S. and Klambt, C., Curr. Opin. Neurobiol., 1999, vol. 9, pp. 531–536.

    Article  CAS  PubMed  Google Scholar 

  10. Guelen, L., Pagie, L., Brasset, E., et al., Nature, 2008, vol. 453, pp. 948–951.

    Article  CAS  PubMed  Google Scholar 

  11. Shevelyov, Y.Y., Lavrov, S.A., Mikhaylova, L.M., et al., Proc. Natl. Acad. Sci. U. S. A., 2009, vol. 106, pp. 3282–3287.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Kind, J., Pagie, L., de Vries, S.S., et al., Cell, 2015, vol. 163, pp. 134–147.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Bohm, R.A., Welch, W.P., Goodnight, L.K., et al., Proc. Natl. Acad. Sci. U.S.A., 2010, vol. 107, pp. 16378–16383.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to A. V. Pindyurin.

Additional information

Original Russian Text © A.V. Pindyurin, 2017, published in Doklady Akademii Nauk, 2017, Vol. 472, No. 2, pp. 222–225.

The article was translated by the author.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Pindyurin, A.V. Genomic mapping of chromatin proteins by using Daminv modification of an FLP-dependent DamID approach. Dokl Biochem Biophys 472, 15–18 (2017). https://doi.org/10.1134/S1607672917010057

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1607672917010057

Navigation