Abstract
Cytosine complexes with nitrosonium ion were studied by the RI-MP2/L1 method. Addition of nitrosonium ion to cytosine tautomers leads to formation of a set of nitrosonium complexes with different structures (1η–3η). n-Complexes formed via NO+ coordination to the nitrogen and oxygen atoms are energetically more favorable than π-complexes. The complex of cytosine as 4-aminopyrimidin-2(1H)-one tautomer with nitrosonium ion coordinated to the carbonyl oxygen atom occupies the global minimum on the potential energy surface. Structural features of the complexes are discussed.
Similar content being viewed by others
References
Hayat, S., Hasan, S.A., Mori, M., Fariduddin, Q., and Ahmad, A., Nitric Oxide in Plant Physiology, Hayat, S., Mori, M., Pichtel, J., and Ahmad, A., Eds., Weinheim: Wiley-VCH, 2010, p. 1.
Vanin, A.F., Ross. Khim. Zh., 2009, vol. 53, no. 6, p. 70.
Stojanović, S., Stanić, D., Nikolić, M., Spasić, M., and Niketić, V., Nitric Oxide, 2004, vol. 11, p. 256.
Lipton, S.A., Choi, Y.-B., Pan, Z.-H., Lei, S.Z., Chen, H.-S.V., Sucher, N.J., Loscalzo, J., Singel, D.J., and Stamler, J.S., Nature, 1993, vol. 364, p. 626.
Stamler, J.S., Singel, D.J., and Loscalzo, J., Science, 1992, vol. 258, p. 1898.
Kirchner, J.J., Sigurdsson, S.Th., and Hopkins, P.B., J. Am. Chem. Soc., 1992, vol. 114, p. 4021.
Elcock, A.H., Lyne, P.D., Mulholland, A.J., Nandra, A., and Richards, W.G., J. Am. Chem. Soc., 1995, vol. 117, p. 4706.
Andreev, R.V., Borodkin, G.I., and Shubin, V.G., Russ. J. Org. Chem., 2011, vol. 47, p. 1703.
Andreev, R.V., Borodkin, G.I., and Shubin, V.G., Russ. J. Org. Chem., 2012, vol. 48, p. 52.
Andreev, R.V., Borodkin, G.I., and Shubin, V.G., Russ. J. Org. Chem., 2012, vol. 48, p. 1216.
Andreev, R.V., Borodkin, G.I., and Shubin, V.G., Russ. J. Org. Chem., 2012, vol. 48, p. 1337.
Katritzky, A.R. and Karelson, M., J. Am. Chem. Soc., 1991, vol. 113, p. 1561.
Shukla, M.K. and Leszczynski, J., J. Phys. Chem. A, 2002, vol. 106, p. 11 338.
Sambrano, J.R., de Souza, A.R., Queralt, J.J., and Andrés, J., Chem. Phys. Lett., 2000, vol. 317, p. 437.
Gorb, L., Podolyan, Y., and Leszczynski, J., J. Mol. Struct.: THEOCHEM, 1999, vol. 487, p. 47.
Leś, A., Adamowicz, L., and Bartlett, R.J., J. Phys. Chem., 1989, vol. 93, p. 4001.
Kobayashi, R., J. Phys. Chem. A, 1998, vol. 102, p. 10 813.
Fogarasi, G., J. Phys. Chem. A, 2002, vol. 106, p. 1381.
Wolken, J.K., Yao, C., Tureček, F., Polce, M.J., and Wesdemiotis, C., Int. J. Mass Spectrom., 2007, vol. 267, p. 30.
Estrin, D.A, Paglieri, L., and Corongiu, G., J. Phys. Chem., 1994, vol. 98, p. 5653.
Piacenza, M. and Grimme, S., J. Comput. Chem., 2004, vol. 25, p. 83.
Szczesniak, M., Szczepaniak, K., Kwiatkowski, J.S., KuBulat, K., and Person, W.B., J. Am. Chem. Soc., 1988, vol. 110, p. 8319; Blagoi, Yu.P., Sheina, G.G., Ivanov, A.Yu., Radchenko, E.D., Kosevich, M.V., Shelkovsky, V.S., Boryak, O.A., and Rubin, Yu.V., Low Temperature Phys., 1999, vol. 25, p. 747; Ten, G.N. and Baranov, V.I., J. Appl. Spectrosc., 2005, vol. 72, p. 155.
McClure, R.J. and Craven, B.M., Acta Crystallogr., Sect. B, 1973, vol. 29, p. 1234; Voet, D. and Rich, A., Prog. Nucleic Acid Res. Mol. Biol., 1970, vol. 10, p. 183.
Domingo, A., Rodríguez-Fortea, A., and de Graaf, C., J. Chem. Theory Comput., 2012, vol. 8, p. 235.
Nir, E., Müller, M., Grace, L.I., and de Vries, M.S., Chem. Phys. Lett., 2002, vol. 355, p. 59.
Brown, R.D., Godfrey, P.D., McNaughton, D., and Pierlot, A.P., J. Am. Chem. Soc., 1989, vol. 111, p. 2308.
Feyer, V., Plekan, O., Richter, R., Coreno, M., Vallllosera, G., Prince, K.C., Trofimov, A.B., Zaytseva, I.L., Moskovskaya, T.E., Gromov, E.V., and Schirmer, J., J. Phys. Chem. A, 2009, vol. 113, p. 5736; Ten, G.N., Zotov, N.B., and Baranov, V.I., Opt. Spektrosk., 2009, vol. 107, p. 251; Ten, G.N. and Bapanov, V.I., Biofizika, 2009, vol. 54, p. 813; Kostko, O., Bravaya, K., Krylov, A., and Ahmed, M., Phys. Chem. Chem. Phys., 2010, vol. 12, p. 2860.
Barker, D.L. and Marsh, R.E., Acta Crystallogr., 1964, vol. 17, p. 1581.
Clowney, L., Jain, S.C., Srinivasan, A.R., Westbrook, J., Olson, W.K., and Berman, H.M., J. Am. Chem. Soc., 1996, vol. 118, p. 509.
Rosokha, S.V. and Kochi, J.K., J. Am. Chem. Soc., 2001, vol. 123, p. 8985.
Zefirov, Yu.V., Kristallografiya, 1997, vol. 42, p. 936.
Allen, F.H., Kennard, O., Watson, D.G., Brammer, L., Orpen, A.G., and Taylor, R., J. Chem. Soc., Perkin Trans. 2, 1987, p. S1.
Borodkin, G.I. and Shubin, V.G., Russ. Chem. Rev., 2001, vol. 70, p. 211.
Feyereisen, M., Fitzgerald, G., and Komornicki, A., Chem. Phys. Lett., 1993, vol. 208, p. 359.
Laikov, D.N., Chem. Phys. Lett., 1997, vol. 281, p. 151; Laikov, D.N. and Ustynyuk, Yu.A., Russ. Chem. Bull., 2005, vol. 54, no. 3, p. 820.
Minkin, V.I., Simkin, B.Ya., and Minyaev, R.M., Kvantovaya khimiya organicheskikh soedinenii. Mekhanizmy reaktsii (Quantum Chemistry of Organic Compounds. Reaction Mechanisms), Moscow: Khimiya, 1986.
Author information
Authors and Affiliations
Additional information
Dedicated to Full Member of the Russian Academy of Sciences I.P. Beletskaya on her jubilee
Original Russian Text © R.V. Andreev, G.I. Borodkin, V.G. Shubin, 2013, published in Zhurnal Organicheskoi Khimii, 2013, Vol. 49, No. 3, pp. 444–450.
Rights and permissions
About this article
Cite this article
Andreev, R.V., Borodkin, G.I. & Shubin, V.G. Quantum-chemical study on cytosine nitrosonium complexes. Russ J Org Chem 49, 432–438 (2013). https://doi.org/10.1134/S1070428013030202
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1070428013030202