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Molecular genetic identification and phylogeny of Daphnia species (Crustacea, Cladocera) from water bodies of the Lake Chany basin

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Abstract

The data on the molecular genetic identification of Daphnia species from the water bodies of the Lake Chany basin are presented. Phylogenetic relationships between these species have been established. The fragments of the mitochondrial DNA genes were used as genetic markers. According to the data obtained, the water bodies examined were inhabited by five Daphnia species, including Daphnia (Daphnia) galeata Sars, D. (D.) longispina O. F. Müller, D. (D.) curvirostris Eylmann, D. (D.) pulex Leydig, and D. (Ctenodaphnia) magna Straus. In addition, longispina a-like individuals that form a separate phylogenetic lineage was identified.

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References

  1. Ivanov, N.M. and Makartseva, E.S., Zooplankton, in Pul’siruyushchee ozero Chany (Fluctuated Lake Chany), Leningrad: Nauka, 1982, pp. 260–272.

    Google Scholar 

  2. Vizer, L.S., Zooplankton of Lake Chany, in Ekologiya ozera Chany (Ecology of Lake Chany), Novosibirsk: Nauka, 1986, pp. 105–115.

    Google Scholar 

  3. Timofeeva, M.V., Zooplankton of Lake Malye Chany, in Ekologiya ozera Chany (Ecology of Lake Chany), Novosibirsk: Nauka, 1986, pp. 115–127.

    Google Scholar 

  4. Vizer, L.S., Distribution of Wide-Spread Species of Planktonic Crustaceans in Lake Chany along Salinity Gradient, Ekologiya, 1989, no. 4, pp. 86–88.

  5. Ermolaev, V.I. and Vizer, L.S., Plankton of Lake Chany, Sib. Ekol. Zh., 2001, no. 4, pp. 371–384.

  6. Ermolaeva, N.I. and Burmistrova, O.S., Effect of Mineralization on Zooplankton of Lake Chany, Sib. Ekol. Zh., 2005, no. 2, pp. 235–247.

  7. Vizer, L.S., Long-Term Zooplankton Dynamics of Lake Chany (West Siberia, Russia), Gidrobiol. Zh., 2008, vol. 44, no. 3, pp. 3–11.

    Google Scholar 

  8. Kotov, A.A., Ishida, S., and Taylor, D.J., A New Species in the Daphnia curvirostris (Crustacea: Cladocera) Complex from the Eastern Palearctic with Molecular Phylogenetic Evidence for the Independent Origin of Neckteeth, J. Plank. Res., 2006, vol. 28, pp. 1067–1079.

    Article  Google Scholar 

  9. Kotov, A.A., A Revision of Leydigia Kurz, 1875 (Anomopoda, Cladocera, Branchiopoda), and Subgeneric Differentiation within the Genus, Zootaxa, 2009, vol. 2082, pp. 1–84.

    Google Scholar 

  10. Kotov, A.A., Ishida, S., and Taylor, D.J., Revision of the Genus Bosmina Baird, 1845 (Cladocera: Bosminidae), Based on Evidence from Male Morphological Characters and Molecular Phylogenies, Zool. J. Linn. Soc., 2009, vol. 156, pp. 1–51.

    Article  Google Scholar 

  11. Korovchinsky, N.M., A Taxonomic Revision of Pseudosida szalayi Daday, 1898 (Crustacea: Cladocera: Sididae) over Its Asian Range, with Focus on the Northernmost Populations First Recorded from the Amur River Basin (Far East of Russia), Zootaxa, 2010, vol. 2345, pp. 1–18.

    Google Scholar 

  12. Gieβler, S., Mader, E., and Schwenk, K., Morphological Evolution and Genetic Differentiation in Daphnia Species Complexes, J. Evol. Biol., 1999, vol. 12, pp. 710–723.

    Article  Google Scholar 

  13. Duffy, M.A., Tessier, A.J., and Kosnik, M.A., Testing the Ecological Relevance of Daphnia Species, Fresh. Biol., 2004, vol. 49, pp. 55–64.

    Article  Google Scholar 

  14. Gieβler, S., Morphological Differentiation within the Daphnia longispina Group, Hydrobiologia, 2001, vol. 442, pp. 55–66.

    Article  Google Scholar 

  15. Petrusek, A., Hoboek, A., Nilssen, J.P., et al., A Taxonomic Reappraisal of the European Daphnia longispina Complex (Crustacea, Cladocera, Anomopoda), Zool. Scripta, 2008, vol. 37, no. 5, pp. 507–519.

    Article  Google Scholar 

  16. Belyaeva, M. and Taylor, D.J., Cryptic Species within the Chydorus sphaericus Species Complex (Crustacea: Cladocera) Revealed by Molecular Markers and Sexual Stage Morphology, Mol. Phyl. Evol., 2009, vol. 50, pp. 534–546.

    Article  CAS  Google Scholar 

  17. Opredelitel’ presnovodnykh bespozvonochnykh Rossii i sopredel’nykh territorii (Key to Freshwater Invertebrates of Russia and Adjacent lands), vol. 2: Rakoobraznye (Crustaceans), Tsalolikhin, S.Ya., Ed., St. Petersburg: Zool. Inst. Russ. Akad. Nauk, 1995.

    Google Scholar 

  18. Opredelitel’ zooplanktona i zoobentosa presnykh vod Evropeiskoi Rossii (Key to Freshwater Zooplankton and Zoobenthos of European Russia), Alekseev, V.R., Tsalolikhin, S.Ya., Eds., Moscow: KMK, 2010.

    Google Scholar 

  19. Glagolev, S.M., Species Composition of Daphnia in Lake Glubokoe with Notes on the Taxonomy and Geographical Distribution of Some Species, Hydrobiologia, 1986, vol. 141, pp. 55–82.

    Article  Google Scholar 

  20. Flβöner, D. and Kraus, K., On Taxonomy of the Daphnia hyalina-galeata Complex (Crustacea: Cladocera), Hydrobiologia, 1986 vol. 137, pp. 97–115.

    Article  Google Scholar 

  21. Schwenk, K., Sand, A., Boersma, M., et al., Genetic Markers, Genealogies and Biogeographic Patterns in the Cladocera, Aqat. Ecol., 1998, vol. 32, pp. 37–51.

    Article  CAS  Google Scholar 

  22. Colbourne, J.K. and Hebert, P.D.N., The Systematics of North American Daphnia (Crustacea: Anomopoda): A Molecular Phylogenetic Approach, Phil. Trans. R. Soc. Lond. B, 1996, vol. 351, pp. 349–360.

    Article  CAS  Google Scholar 

  23. Librado, P. and Rozas, J., DnaSP v5: A Software for Comprehensive Analysis of DNA Polymorphism Data, Bioinformatics, 2009, vol. 25, pp. 1451–1452.

    Article  PubMed  CAS  Google Scholar 

  24. Posada, D., Selection of Models of DNA Evolution with jMODELTEST for DNA Sequence Analysis, Bioinformatics, 2009, vol. 537, pp. 93–112.

    CAS  Google Scholar 

  25. Tamura, K., Peterson, D., Peterson, N., et al., MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods, Mol. Biol. Evol., 2011, vol. 28, pp. 2731–2739.

    Article  PubMed  CAS  Google Scholar 

  26. Tamura, K., Estimation of the Number of Nucleotide Substitutions When There Are Strong Transition-Transversion and G + C-Content Biases, Mol. Biol. Evol., 1992, vol. 9, pp. 678–687.

    PubMed  CAS  Google Scholar 

  27. Tamura, K. and Nei, M., Estimation of the Number of Nucleotide Substitutions in the Control Region of Mitochondrial DNA in Humans and Chimpanzees, Mol. Biol. Evol., 1993, vol. 10, pp. 512–526.

    PubMed  CAS  Google Scholar 

  28. Kimura, M., A Simple Method for Estimating Evolutionary Rates of Base Substitutions through Comparative Studies of Nucleotide Sequences, J. Mol. Evol., 1980, vol. 16, pp. 111–120.

    Article  PubMed  CAS  Google Scholar 

  29. Saitou, N. and Nei, M., The Neighbor-Joining Method: A New Method for Reconstructing Phylogenetic Trees, Mol. Biol. Evol., 1987, vol. 4, pp. 6–25.

    Google Scholar 

  30. Thielsch, A., Brede, N., Petrusek, A., et al., Contribution of Cyclic Parthenogenesis and Colonization History to Population Structure in Daphnia, Mol. Ecol., 2009, vol. 18, pp. 1616–1628.

    Article  PubMed  Google Scholar 

  31. Taylor, D. and Hebert, P.D.N., Habitat-Dependent Hybrid Parentage and Differential Introgression between Neighboringly Sympatric Daphnia Species, Proc. Natl. Acad. Sci. U.S.A., 1993, vol. 90, pp. 7079–7083.

    Article  PubMed  CAS  Google Scholar 

  32. Schwenk, K., Posada, D., and Hebert, P.D.N., Molecular Systematics of European Hyalodaphnia: The Role of Contemporary Hybridization in Ancient Species, Proc. R. Soc. Lond. B, 2000, vol. 267, pp. 1833–1842.

    Article  CAS  Google Scholar 

  33. Taylor, D., Hebert, P.D.N., and Colbourne, J.K., Phylogenetics and Evolution of the Daphnia longispina Group (Crustacea) Based on 12S rDNA Sequence and Allozyme Variation, Mol. Phylogenet. Evol., 1996, vol. 5, pp. 495–510.

    Article  PubMed  CAS  Google Scholar 

  34. Haag, C.R., Riek, M., Hottinger, J.W., et al., Genetic Diversity and Genetic Differentiation in Daphnia Metapopulations with Subpopulations of Known Age, Genetics, 2005, vol. 170, pp. 1809–1820.

    Article  PubMed  CAS  Google Scholar 

  35. Vanoverbeke, J., De Gelas, K., and De Meester, L., Habitat Size and the Genetic Structure of a Cyclical Parthenogen, Daphnia magna, Heredity, 2007, vol. 98, pp. 419–426.

    CAS  Google Scholar 

  36. Taylor, D., Sprenger, H.L., and Ishida, S., Geographic and Phylogenetic Evidence for Dispersed Nuclear Introgression in a Daphniid with Sexual Propagules, Mol. Ecol., 2005, vol. 14, pp. 525–537.

    Article  PubMed  CAS  Google Scholar 

  37. Petrusek, A., Martin, C., Mergeay, J., et al., Daphnia in the Tatra Mountain Lakes: Multiple Colonisation and Hidden Species Diversity Revealed by Molecular Markers, Fund. Appl. Limnol. Arch. Hydrobiol., 2007, vol. 169, no. 4, pp. 279–291.

    Article  Google Scholar 

  38. Nilssen, J.P., Hoboek, A., Petrusek, A., et al., Restoring Daphnia lacustris G.O. Sars, 1862 (Crustacea, Anomopoda): A Cryptic Species in the Daphnia longispina Group, Hydrobiologia, 2007, vol. 594, pp. 5–17.

    Article  CAS  Google Scholar 

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Correspondence to E. I. Zuykova.

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Original Russian Text © E.I. Zuykova, N.A. Bochkarev, A.V. Katokhin, 2013, published in Genetika, 2013, Vol. 49, No. 2, pp. 235–243.

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Zuykova, E.I., Bochkarev, N.A. & Katokhin, A.V. Molecular genetic identification and phylogeny of Daphnia species (Crustacea, Cladocera) from water bodies of the Lake Chany basin. Russ J Genet 49, 206–213 (2013). https://doi.org/10.1134/S1022795412120186

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  • DOI: https://doi.org/10.1134/S1022795412120186

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