Conservation Genetics

, Volume 5, Issue 4, pp 539–543

Counting Alleles with Rarefaction: Private Alleles and Hierarchical Sampling Designs

  • Steven T. Kalinowski

DOI: 10.1023/B:COGE.0000041021.91777.1a

Cite this article as:
Kalinowski, S.T. Conservation Genetics (2004) 5: 539. doi:10.1023/B:COGE.0000041021.91777.1a


The number of alleles (allelic richness) in a population is a fundamental measure of genetic variation, and a useful statistic for identifying populations for conservation. Estimating allelic richness is complicated by the effects of sample size: large samples are expected to have more alleles. Rarefaction solves this problem. This communication extends the rarefaction procedure to count private alleles and to accommodate hierarchical sampling designs.

allelic richnessestimationgenetic diversityrarefactionsample sizespecies diversityspecies richness

Copyright information

© Kluwer Academic Publishers 2004

Authors and Affiliations

  • Steven T. Kalinowski
    • 1
  1. 1.Department of EcologyMontana State UniversityBozemanUSA