Skip to main content
Log in

Artificial Keys for Botanical Identification using a Multilayer Perceptron Neural Network (MLP)

  • Published:
Artificial Intelligence Review Aims and scope Submit manuscript

Abstract

In this paper, practical generation of identification keys for biological taxa using a multilayer perceptron neural network is described. Unlike conventional expert systems, this method does not require an expert for key generation, but is merely based on recordings of observed character states. Like a human taxonomist, its judgement is based on experience, and it is therefore capable of generalized identification of taxa. An initial study involving identification of three species of Iris with greater than 90% confidence is presented here. In addition, the horticulturally significant genus Lithops (Aizoaceae/Mesembryanthemaceae), popular with enthusiasts of succulent plants, is used as a more practical example, because of the difficulty of generation of a conventional key to species, and the existence of a relatively recent monograph. It is demonstrated that such an Artificial Neural Network Key (ANNKEY) can identify more than half (52.9%) of the species in this genus, after training with representative data, even though data for one character is completely missing.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  • Clark, J. Y. (1996). A key to Lithops N. E. Br. (Aizoaceae). Bradleya 14: 1–9.

    Google Scholar 

  • Clark, J. Y. & Warwick, K. (1995). Detection of faults in a high speed packaging machine using a multilayer perceptron (MLP). IEE Colloquium: Innovations in manufacturing control through mechatronics, Newport, Gwent, UK, Digest No. 95/214: 7/1–7/3.

  • Cole, D. T. (1986). Lithops Locality Data. Desmond T. Cole: Swakaroo, Emmarentia, South Africa, January.

    Google Scholar 

  • Cole, D. T. (1988). Lithops, Flowering Stones. Randburg, South Africa: Acorn Books.

    Google Scholar 

  • Dallwitz, M. J. (1974). A flexible computer program for generating identification keys. Systematic Zoology 23: 50–57.

    Google Scholar 

  • Dallwitz, M. J. (1980). A general system for coding taxonomic descriptions. Taxon 29: 41–46.

    Google Scholar 

  • Dallwitz, M. J., Paine, T. A. & Zurcher, E. J. (1993). User's guide to the DELTA system: a general system for processing taxonomic descriptions, 4th edition. Canberra, Australia: CSIRO Division of Entomology.

    Google Scholar 

  • DeBoer, H. W. & Boom, B. K. (1964). An analytical key for the genus Lithops. National Cactus & Succulent Society Journal 19: 34–37, 51–55.

    Google Scholar 

  • Everitt, B. S. (1993). Cluster Analysis. New York: Edward Arnold/Halsted Press.

    Google Scholar 

  • Fearn, B. (1981). Lithops. Oxford, UK: British Cactus & Succulent Society (Handbook No. 4).

    Google Scholar 

  • Fisher, R. A. (1936). The use of multiple measurements in taxonomic problems. Annals of Eugenics 7: 179–188.

    Google Scholar 

  • Goodacre, R. (1994). Characterisation and quantification of microbial systems using pyrolysis mass spectrometry: introducing neural networks to analytical pyrolysis. Microbiology Europe 2(2): 16–22.

    Google Scholar 

  • Goodacre, R., Kell, D. B. & Bianchi, G. (1992). Neural networks and olive oil. Nature 359: 594.

    Google Scholar 

  • Goodacre, R., Trew, S., WrigleyJones, C., Neal, M. J., Maddock, J., Ottley, T. W., Porter, N. & Kell, D. B. (1994a). Rapid screening for metabolite overproduction in fermentor broths, using pyrolysis mass spectrometry with multivariate calibration and artificial neural networks. Biotechnology and Bioengineering 44: 1205–1216.

    Google Scholar 

  • Goodacre, R., Neal, M. J., Kell, D. B., Greenham, L. W., Nobel W. C. & Harvey, R. G. D. (1994b). Rapid identification using pyrolysis mass spectrometry and artificial neural networks of Propionibacterium acnes isolated from dogs. Journal of Applied Bacteriology 76: 124–134.

    Google Scholar 

  • Hammer, S. A. & Uijs, R. (1994). Lithops coleorum S. A. Hammer & R. Uijs sp. nov., a new species of Lithops N. E. Br. from the Northern Transvaal. Aloe 31(2): 36–38.

    Google Scholar 

  • Haykin, S. (1994). Neural networks – a comprehensive foundation. New York: Macmillan College Publishing Company, Inc.

    Google Scholar 

  • Lobanov, A. J., Schilow, W. F. & Nikritin, L. M. (1981). Zur Anwendung von Computern für die Determination in der Entomologie. Deutsche Entomologie Zeitung 28: 29–43.

    Google Scholar 

  • Mathew, B. (1981). The Iris. London: B. T. Batsford Ltd.

    Google Scholar 

  • Matthews, C. P., Clark, J. Y., Sharkey, P. M. & Warwick, K. (1995). A comparison of cluster analysis and neural networks for the reliability of machinery. Proceedings SPIE Conference Photons East. Philadelphia.

  • Pankhurst, R. J. (1991). Practical Taxonomic Computing. UK: University of Cambridge Press.

    Google Scholar 

  • Pankhurst, R. J. & Aitchison, R. R. (1975). A computer program to construct polyclaves. In Pankhurst, R. J. (ed.) Biological Identification with Computers, 73–78. London and Orlando: Academic Press.

    Google Scholar 

  • Partridge, T. R., Dallwitz, M. J. & Watson, L. (1993). A primer for the DELTA system, 3rd edition. Canberra, Australia: CSIRO Division of Entomology.

    Google Scholar 

  • Ray, A. K. (1991). Equipment fault diagnosis – A neural network approach. Computers in Industry 16: 169–177.

    Google Scholar 

  • Rumelhart, D. E. & McClelland, J. L. (1986). Parallel Distributed Processing, Vols. 1 & 2. Cambridge, Mass.: MIT Press.

    Google Scholar 

  • Wallace, R. S. (1990). Systematic significance of allozyme variation in the genus Lithops (Mesembryanthemaceae). Mitt. Inst. Allg. Bot. Hamburg: Proceedings of the twelfth plenary meeting of aetfat. Symposium VI, 509–524. Hamburg, Germany: Band 23b.

    Google Scholar 

  • Yoon, Y., Brobst, R. W., Bergstresser, P. R. & Peterson, L. (1989). A desktop neural network for dermatology diagnosis. Journal of Neural Network Computing 1: 43–52.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Clark, J.Y., Warwick, K. Artificial Keys for Botanical Identification using a Multilayer Perceptron Neural Network (MLP). Artificial Intelligence Review 12, 95–115 (1998). https://doi.org/10.1023/A:1006544506273

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1006544506273

Navigation