Skip to main content

Advertisement

Log in

Characterisation of 15 novel microsatellite loci for the grey reef shark (Carcharhinus amblyrhynchos)

  • Microsatellite Letters
  • Published:
Conservation Genetics Resources Aims and scope Submit manuscript

Abstract

Grey reef sharks (Carcharhinus amblyrhynchos) are important apex predators on coral reefs, and their numbers have declined dramatically as a result of overfishing. Knowledge of environmental factors that shape gene flow is essential for developing appropriate management strategies, but the lack of suitable genetic markers has hindered research on this species. Here, we characterised 15 polymorphic microsatellite loci for grey reef sharks. None of the loci deviated significantly from Hardy–Weinberg equilibrium and there was no evidence of Linkage Disequilibrium. Several loci cross-amplified in other carcharhinid species, and will be useful in future studies of this family.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Gardner MG, Fitch AJ, Bertozzi T, Lowe AJ (2011) Rise of the machines—recommendations for ecologists when using next generation sequencing for microsatellite development. Mol Ecol Resour 11:1093–1101

    Article  PubMed  Google Scholar 

  • Meglécz E, Costedoat C, Dubut V, Gilles A, Malausa T, Pech N, Martin J-F (2010) QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinformatics 26:403–404

    Article  PubMed  Google Scholar 

  • Robbins WD, Hisano M, Connolly SR, Choat JH (2006) Ongoing collapse of coral-reef shark populations. Curr Biol 16:2314–2319

    Google Scholar 

  • Rousset F (2008) genepop’007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Resour 8:103–106

    Article  PubMed  Google Scholar 

  • Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18:233–234

    Article  CAS  PubMed  Google Scholar 

  • Smale MJ (2009) Carcharhinus amblyrhynchos. In: IUCN 2013. IUCN Red List of Threatened Species. Version 2013.2. Accessed 12 Feb 2014

Download references

Acknowledgments

This study was funded by the Department of Biological Sciences at Macquarie University and the Sea World Research and Rescue Foundation. We would like to thank Siobhan Dennison and Nicolette Armansin for laboratory assistance.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Paolo Momigliano.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOC 33 kb)

Supplementary material 2 (DOC 36 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Momigliano, P., Robbins, W.D., Gardner, M. et al. Characterisation of 15 novel microsatellite loci for the grey reef shark (Carcharhinus amblyrhynchos). Conservation Genet Resour 6, 661–663 (2014). https://doi.org/10.1007/s12686-014-0174-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12686-014-0174-z

Keywords

Navigation