Abbasi, S.A., P.C. Nipaney, and G.D. Schaumberg. 1990. Bioenergy potential of eight common aquatic weeds. Biological Wastes
Allan, J.D. 2004. Landscapes and riverscapes: The influence of land use on stream ecosystems. Annual Review of Ecology, Evolution, and Systematics
Bailey, E. 2005. Measurements of nutrient and oxygen fluxes in estuarine and coastal marine sediments: Literature review and data report, Technical Report Series Ref. No. [UMCES]CBL 05–091. University of Maryland Center for Environmental Science, Chesapeake Biological Laboratory, Solomons, MD, 36pp. http://www.gonzo.cbl.umces.edu
Bicknell, B.R., J.C. Imhoff, J.L. Kittle Jr., T.H. Jobes, and A.S. Donigian Jr. 2005. Hydrological Simulation Program—FORTRAN. User’s Manual for Release 12.2. U.S. Environmental Protection Agency Ecosystem Research Division, Athens, GA, and U.S. Geological Survey, Office of Surface Water, Reston, VA.
Borja, A., D.M. Dauer, M. Elliott, and C.A. Simenstad. 2010. Medium- and long-term recovery of estuarine and coastal ecosystems: patterns, rates and restoration effectiveness. Estuaries and Coasts
Boynton, W.R., J.H. Garber, R. Summers, and W.M. Kemp. 1995. Inputs, transformations, and transport of nitrogen and phosphorus in Chesapeake Bay and selected tributaries. Estuaries
Boynton, W.R., and W.M. Kemp. 2000. Influence of river flow and nutrient loading on selected ecosystem processes and properties in Chesapeake Bay. In Estuarine Science: A synthetic approach to research and practice, ed. J.E. Hobbie, 269–298. Washington, DC: Island Press.
Boynton, W.R. and W.M. Kemp. 2008. Nitrogen in Estuaries. In: Capone, D., D. A. Bronk, M. R. Mulholland and E. J. Carpenter (eds.), Nitrogen in the Marine Environment (Second Edition). Academic Press, p.809-866: 978-0-12-372522-6.
Boynton, W.R., J.D. Hagy, J.C. Cornwell, W.M. Kemp, S.M. Greene, M.S. Owens, J.E. Baker, and R.K. Larsen. 2008. Nutrient budgets and management actions in the Patuxent River Estuary, Maryland. Estuaries and Coasts
Boynton, W.R., J.M. Testa and W.M. Kemp. 2009. An Ecological Assessment of the Corsica River Estuary and Watershed Scientific Advice for Future Water Quality Management: Final Report to Maryland Department of Natural Resources. Ref. No. [UMCES]CBL 09–117. [UMCES Technical Series No. TS-587-09-CBL].
Boynton, W.R., L.A. Wainger, E.M. Bailey, A.R. Bayard, C.L. Sperling and M.A.C.Ceballos. 2011. Ecosystem Processes Component (EPC). Maryland Chesapeake Bay Water Quality Monitoring Program, Level 1 report No. 28. Jul. 1984–Dec. 2010. Ref. No. [UMCES] CBL 11–024. [UMCES Technical Series No. TS-620-11-CBL].
Boynton, W.R., and S.W. Nixon. 2012. Budget Analyses of Estuarine Ecosystems, Chapter 17, pp 443–464. In Estuarine Ecology, ed. John Day et al. New Jersey: Wiley-Blackwell.
Bricker, S. B., C. G. Clement, D. E. Pirhalla, S. P. Orlando, and D. R. G. Farrow. 1999. National Estuarine Eutrophication Assessment: effects of nutrient enrichment in the nation’s estuaries. NOAA, National Ocean Science, Centers for Coastal Ocean Science, Silver Spring, MD.
Burns, D.A., Lynch, J.A., Cosby, B.J., Fenn, M.E., Baron, J.S., US EPA Clean Air Markets Div. 2011. National Acid Precipitation Assessment Program Report to Congress 2011: An Integrated Assessment, National Science and Technology Council, Washington, DC, 114 p
Caffrey, J.M. 2004. Factors controlling net ecosystem metabolism in U. S. estuaries. Estuaries
Carter, V., N.B. Rybicki, J.M. Landwehr, and M. Turtora. 1994. Role of weather and water quality in population dynamics of submersed macrophytes in the tidal Potomac River. Estuaries
Castro, M.S., C.T. Driscoll, T.E. Jordan, W.G. Reay, and W.R. Boynton. 2003. Sources of nitrogen to estuaries In the United States. Estuaries
Cerco, C.F. and M.R. Noel. 2004. The 2002 Chesapeake Bay Eutrophication Model. EPA 903 04–004. U.S. Environmental Protection Agency, Chesapeake Bay Program Office, Annapolis, MD.
Cerco, C., S.C. Kim, and M.R. Noel. 2010. The 2010 Chesapeake Bay Eutrophication Model. A Report to the US Environmental Protection Agency and to the US Army Corps of Engineer Baltimore District. US Army Engineer Research and Development Center, Vicksburg, MD. (also http://www.chesapeakebay.net/content/publications/cbp_26167.pdf
Chesapeake Bay Program. 2011. Point source loading database. US EPA Chesapeake Bay Program, Annapolis, MD (http://www.chesapeakebay.net
Chesapeake Bay Water Quality Monitoring Program. 2012. US EPA Chesapeake Bay Program, Annapolis, MD (http://www.chesapeakebay.net
Cloern, J.E. 2001. Our evolving conceptual model of the coastal eutrophication problem. Marine Ecology Progress Series
Conley, D.J., S. Markager, J. Andersen, T. Ellermann, and L.M. Svendsen. 2002. Coastal eutrophication and the Danish National Aquatic Monitoring and Assessment Program. Estuaries
Conley, D.J., J. Carstensen, G. Ertebjerg, P.B. Christensen, T. Dalsgaard, J.L.S. Hansen, and A.B. Josefson. 2007. Long-term changes and impacts of hypoxia in Danish coastal waters. Ecological Applications
Conley, D.J., J. Carstensen, R. Vaquer-Sunyer, and C.M. Duarte. 2009. Ecosystem thresholds with hypoxia. Hydrobiologia
Cowan, J.L.W., and W.R. Boynton. 1996. Sediment–water oxygen and nutrient exchanges along the longitudinal axis of Chesapeake Bay: Seasonal patterns, controlling factors and ecological significance. Estuaries
Cronin, W.B. and D.W. Pritchard. 1975. Additional Statistics on the Dimensions of the Chesapeake Bay and its Tributaries: Cross-section Widths and Segment Volumes Per Meter Depth. Special Report 42. Chesapeake Bay Institute, The Johns Hopkins University. Reference 75–3. Baltimore, MD
DiToro, D. M. 2001. Sediment Flux Modeling. Wiley-Interscience, NY. 624pp.
Duarte, C. M., D. J. Conley, J. Carstensen, and Maria Sanchez-Camacho. 2009. Estuaries and Coasts 32: 29–36.
Fisher, D., and M. Oppenheimer. 1991. Atmospheric nitrogen deposition and the Chesapeake Bay estuary. Ambio 20(3): 102–108.
Gao, Y., J.C. Cornwell, D.K. Stoecker, and M.S. Owens. 2012. Effects of cyanobacterial-driven pH increases on sediment nutrient fluxes and coupled nitrification-denitrification in a shallow freshwater estuary. Biogeosciences
Greene, S. 2005a. Tidal freshwater and oligohaline marshes as nutrient sinks in the Patuxent River estuary, Maryland. MS Thesis, University of Maryland, College Park, MD
Greene, S. 2005b. Measurements of denitrification in aquatic ecosystems; Literature review and data report. Technical Report Series Ref. No. [UMCES]CBL 05–094. University of Maryland Center for Environmental Science, Solomons, MD
Greening, H., and A. Janicki. 2006. Toward reversal of eutrophic conditions in a subtropical estuary: Water quality and seagrass response to nitrogen reductions in Tampa Bay, Florida. USA. Environ. Mgmt.
Gruber, R.K., and W.M. Kemp. 2010. Feedback effects in a coastal canopy-forming submersed plant bed. Limnology and Oceanography
Hagy, J.D., L.P. Sanford, and W.R. Boynton. 2000. Estimation of net physical transport and hydraulic residence times for a coastal plain estuary using box models. Estuaries
Hagy, J.D., W.R. Boynton, C.W. Keefe, and K.V. Wood. 2004. Hypoxia in Chesapeake Bay, 1950–2001: Long-term change in relation to nutrient loading and river flow. Estuaries
Hodgkins, C.L.S, W.R. Boynton, E.M. Bailey, and M.A.C. Ceballos. 2012. Community Metabolism as an Indicator of Water Quality Impairment and Restoration. Ecosystem Processes Component (EPC). Maryland Chesapeake Bay Water Quality Monitoring Program, Level 1 report No. 29. Jul. 1984–Dec. 2012. Ref. No. [UMCES] CBL 12–020. [UMCES Technical Series No. TS-637-12-CBL].
Holland, A.F., D.M. Sanger, C.P. Gawle, S.B. Lerberg, M.S. Santiago, G.H.M. Riekerk, L.E. Zimmerman, and G.I. Scott. 2004. Linkages between tidal creek ecosystems and the landscape and demographic attributes of their wetlands. Journal of Experimental Marine Biology and Ecology
Howarth, R. W. and R. Marino. 2006. Nitrogen as the limiting nutrient for eutrophication in coastal marine ecosystems: Evolving views over three decades. Limnol. Oceanogr. 51 (1, part2): 364–376.
Jaworski, N. J., W. Romano, C. Buchanan, and C. Jaworski. 2007. The Potomac River Basin and its Estuary: Landscape Loadings and Water Quality Trends, 1895–2005. Potomac Integrative Analysis Online Collection at www.potomacriver.org
Jeppesen, E. and 30 others. 2005. Lake responses to reduced nutrient loading: an analysis of contemporary long-yerm data from 35 case studies. Freshw. Biol. 50: 1747–1771.
Johansson, J.O.R. 2002. Historical overview of Tampa Bay water quality and seagrass issues and trends, p. 1–10. In Greening, H.S. (ed.), Proceedings, Seagrass Management, It’s Not Just Nutrients! Symposium held August 22–24, 2000, St. Petersburg, FL. Tampa Bay Estuary Program. 246 p.
Kemp, W.M., W.R. Boynton, J.E. Adolf, D.F. Boesch, W.C. Boicourt, G. Brush, J.C. Cornwell, T.R. Fisher, P.M. Glibert, J.D. Hagy, L.W. Harding, E.D. Houde, D.G. Kimmel, W.D. Miller, R.I.E. Newell, M.R. Roman, E.M. Smith, and J.C. Stevenson. 2005. Eutrophication of Chesapeake Bay: historical trends and ecological interactions. Marine Ecology Progress Series
Kemp, W.M., J.M. Testa, D.J. Conley, D. Gilbert, and J.D. Hagy. 2009. Temporal responses of coastal hypoxia to nutrient loading and physical controls. Biogeosciences
Kemp, W.M., and W.R. Boynton. 2012. Synthesis in estuarine and coastal ecological research: What is it, why is it important, and how do we teach it? Estuaries and Coasts
Kronvang, B., K. Jeppesen, D.J. Conley, M. Sondergaard, S.E. Larsen, N.B. Ovesen, and J. carstensen. 2005. Nutrient pressures and ecological responses to nutrient loading reductions in Danish streams, lakes and coastal waters. Journal of Hydrology
Linker, L.C., G.W. Shenk, P. Wang, and R. Batiuk. 2008. In Chapter 3: Integration of Modeling, Research, and Monitoring in the Chesapeake Bay Program in Management of Water Quality and Irrigation Techniques, ed. Albiac Jose and Dinar Ariel. London, UK: Earthscan.
Linker, L.C., G.W. Shenk, R.L. Dennis, and J.S. Sweeney. 2000. Cross-Media Models of the Chesapeake Bay Watershed and Airshed. Water Quality and Ecosystem Modeling
Latimer, J.S., and S.A. Rego. 2010. Empirical relationship between eelgrass extent and predicted watershed-derived nitrogen loading for shallow New England estuaries. Estuarine, Coastal and Shelf Science
Maryland Department of Natural Resources. 2012. Eyes on the Bay (www.eyesonthebay.gov
Maryland Department of Planning. 2012. Land Uses in Maryland (www.mdp.state.md.us
Merrill, J. Z. 1999. Tidal freshwater marshes as nutrient sinks: particulate nutrient burial and denitrification. MS Thesis, University of Maryland, College Park, MD
Moore, K.A., D.J. Wilcox, and R.J. Orth. 2000. Analysis and abundance of submersed aquatic vegetation communities in the Chesapeake Bay. Estuaries
Mukherjee, B., D. Mukherjee, and M. Nivedita. 2008. Modeling carbon and nutrient cycling in a simulated pond system at Ranchi. Ecological Modelling
Mullholland et al. 2008. Stream denitrification across biomes and its response to anthropogenic nitrate loading. Nature 452: 202–206
Murphy, R.R., W.M. Kemp, and W.P. Ball. 2011. Long-term trends in Chesapeake Bay seasonal hypoxia, stratification, and nutrient loading. Estuaries and Coasts
Nutrient Analytical Services Laboratory, Chesapeake Biological Laboratory. 2012. http://nasl.cbl.umces.edu
Nixon, S.W. 1988. Physical energy inputs and the comparative ecology of lake and marine ecosystems. Limnology and Oceanography
Nixon, S.W. 1995. Coastal marine eutrophication: A definition, social causes, and future concerns. Ophelia
Nixon, S., B. Buckley, S. Granger, and J. Bintz. 2001. Responses of very shallow marine ecosystems to nutrient enrichment. Human and Ecological Risk Assessment
Nixon, S.W. 2009. Eutrophication and the macroscope. Hydrobiologia
Odum, H.T., and C.M. Hoskin. 1958. Comparative studies on the metabolism of marine waters, 5th ed, 16–46. Univ. Texas: Publ. Inst. Mar. Sci.
Orth, R.J., M.R. Williams, S.R. Marion, D.J. Wilcox, T.J.B. Carruthers, K.A. Moore, W.M. Kemp, W.C. Dennison, N. Rybicki, P. Bergstrom, and R.A. Batiuk. 2010. Long-term trends in submersed aquatic vegetation (SAV) in Chesapeake Bay, USA, related to water quality. Estuaries and Coasts
Paerl, H.W. 2009. Controlling eutrophication along the freshwater–marine continuum: Duel nutrient (N and P) reductions are essential. Estuaries and Coasts
Parsons, T.R., M. Takahashi, and B. Hargrave. 1984. Biological Oceanographic Processes. Oxford: Pergamon Press. 330 p.
Pina-Ochoa, E., and M. Alverez-Cobelas. 2006. Denitrification in aquatic environments: a cross-system analysis. Biogeochemistry
Rabalais, N.N. 2002. Nitrogen in aquatic ecosystems. Ambio
Rask, N., S.E. Pedersen, and M.H. Jensen. 1999. Response to lower nutrient discharges in the coastal waters around the island of Funen, Denmark. Hydrobiologia
Ruhl, H. A. and N. B. Rybicki. 2010. Long-term reductions in anthropogenic nutrients link to improvements in Chesapeake Bay habitat. PNAS
Ryther, J. H. 1954. The ecology of phytoplankton blooms in Moriches Bay and Great South Bay, Long Island, New York. Contribution No. 685. Woods Hole Oceanographic Institution, Woods Hole, MA pp. 198–207.
Sarthou, G., K.R. Timmermans, S. Blain, and P. Treguer. 2005. Growth physiology and fate of diatoms in the ocean: A review. Journal of Sea Research
Schueler, T. 1994. The importance of imperviousness. Watershed Protection Techniques 1(3): 100–111.
Shenk G.W., and L.C. Linker . 2013. Development and Application of the 2010 Chesapeake TMDL Watershed Model. Journal of the American Water Resources Association
, (JAWRA) 1-15. doi:10.1111/jawr.12109
Smith, V. H., S. B. Joye and R. W. Howarth. 2006. Eutrophication of freshwater and marine ecosystems. Limnol. Oceanogr. 51(1, part 2): 351–355.
United States Environmental Protection Agency. 2010. Chesapeake Bay Total Maximum Daily Load for Nitrogen, Phosphorus and Sediment. U.S. Environmental Protection Agency Chesapeake Bay Program Office, Annapolis MD. (http://www.chesapeake.gov
Valiela, I., J. McClelland, J. Hauxwell, P. J. Behr, D. Hersh, and K. Foreman. 1997. Macroalgal blooms in shallow estuaries: Controls and ecophysiological and ecosystem consequences. Limnol. Oceanogr. 42(5, part 2): 1105–1118.
Virginia Institute of Marine Science (VIMS). 2011. http://web.vims.edu/bio/sav/
Ward, L.G., W.M. Kemp, and W.R. Boynton. 1984. The influence of waves and seagrass communities on suspended particulates in an estuarine embayment. Marine Geology
Yamamoto, T. 2003. The Seto Inland Sea: eutrophic or oligotrophic? Marine Pollution Bulletin
Yu, H., C. Ye, X. Song, and J. Liu. 2010. Comparative analysis of growth and physio-biochemcial responses of Hydrilla verticillata
to different sediments in freshwater microcosms. Ecological Engineering