Skip to main content
Log in

Evaluation of the MALDI-TOF MS profiling for identification of newly described Aeromonas spp.

  • Published:
Folia Microbiologica Aims and scope Submit manuscript

Abstract

The genus Aeromonas comprises primarily aquatic bacteria and also serious human and animal pathogens with the occurrence in clinical material, drinking water, and food. Aeromonads are typical for their complex taxonomy and nomenclature and for limited possibilities of identification to the species level. According to studies describing the use of MALDI-TOF MS in diagnostics of aeromonads, this modern chemotaxonomical approach reveals quite high percentage of correctly identified isolates. We analyzed 64 Aeromonas reference strains from the set of 27 species. After extending the range of analyzed Aeromonas species by newly described ones, we proved that MALDI-TOF MS procedure accompanied by Biotyper tool is not a reliable diagnostic technique for aeromonads. We obtained quite high percentage of false-positive, incorrect, and uncertain results. The identification of newly described species is accompanied with misidentifications that were observed also in the case of pathogenic aeromonads.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • Abbott SL, Cheung WKW, Kroske-Bystrom S, Malekzadeh T, Janda JM (1992) Identification of Aeromonas strains to the genospecies level in the clinical laboratory. J Clin Microbiol 30:1262–1266

    CAS  PubMed Central  PubMed  Google Scholar 

  • Abbott SL, Cheung WK, Janda JM (2003) The genus Aeromonas: biochemical characteristics, atypical reactions, and phenotypic identification schemes. J Clin Microbiol 41(6):2348–2357

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Alavandi S, Ananthan S, Kang G (1998) Prevalence, in-vitro secretory activity, and cytotoxicity of Aeromonas species associated with childhood gastroenteritis in Chennai (Madras), India. Jpn J Med Sci Biol 51(1):1–12

    Article  CAS  PubMed  Google Scholar 

  • Alperi A, Martínez-Murcia AJ, Ko WC, Monera A, Saavedra MJ, Figueras MJ (2010a) Aeromonas taiwanensis sp. nov. and Aeromonas sanarellii sp. nov., clinical species from Taiwan. Int J Syst Evol Microbiol 60:2048–2055. doi:10.1099/ijs. 0.014621-0

    Article  CAS  PubMed  Google Scholar 

  • Alperi A, Martínez-Murcia AJ, Monera A, Saavedra MJ, Figueras MJ (2010b) Aeromonas fluvialis sp. nov., isolated from a Spanish river. Int J Syst Evol Microbiol 60:72–77. doi:10.1099/ijs. 0.011643-0

    Article  CAS  PubMed  Google Scholar 

  • Aravena-Román M, Beaz-Hidalgo R, Inglis TJJ, Riley TV, Martínez-Murcia AJ, Chang BJ, Figueras MJ (2013) Aeromonas australiensis sp. nov., isolated from irrigation water. Int J Syst Evol Microbiol 63:2270–2276. doi:10.1099/ijs. 0.040162-0

    Article  PubMed  Google Scholar 

  • Beaz-Hidalgo R, Alperi A, Figueras MJ, Romalde JL (2009) Aeromonas piscicola sp. nov., isolated from diseased fish. Syst Appl Microbiol 32:471–479. doi:10.1016/j.syapm.2009.06.004

    Article  CAS  PubMed  Google Scholar 

  • Beaz-Hidalgo R, Shakèd T, Laviad S, Halpern M, Figueras MJ (2012) Chironomid egg masses harbour the clinical species Aeromonas taiwanensis and Aeromonas sanarellii. FEMS Microbiol Lett 337(1):48–54. doi:10.1111/1574-6968.12003

    Article  CAS  PubMed  Google Scholar 

  • Beaz-Hidalgo R, Martínez-Murcia A, Figueras MJ (2013) Reclassification of Aeromonas hydrophila subsp. dhakensis Huys et al. 2002 and Aeromonas aquariorum Martínez-Murcia et al. 2008 as Aeromonas dhakensis sp. nov. comb nov. and emendation of the species Aeromonas hydrophila. Syst Appl Microbiol 36(3):171–6. doi:10.1016/j.syapm.2012.12.007

    Article  CAS  PubMed  Google Scholar 

  • Benagli C, Demarta A, Caminada A, Ziegler D, Petrini O, Tonolla M (2012) A rapid MALDI-TOF MS identification database at genospecies level for clinical and environmental Aeromonas strains. PLoS ONE 7(10):e48441. doi:10.1371/journal.pone.0048441

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Burke V, Robinson J, Gracey M, Peterson D, Partridge K (1984) Isolation of Aeromonas hydrophila from a metropolitan water supply: seasonal correlation with clinical isolates. Appl Environ Microbiol 48(2):361–366

    CAS  PubMed Central  PubMed  Google Scholar 

  • Carnahan A, Altwegg M (1996) Taxonomy. In: Austin B, Altwegg M, Gosling PJ, Joseph S (eds) The genus Aeromonas. Wiley, Chichester, pp 1–38

    Google Scholar 

  • Carnahan MC, Joseph SW (2005) Order XII. Aeromonadales ord. nov. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds) Bergey’s manual of systematic bacteriology, 2nd edn. vol. 2 (the Proteobacteria), part B (the Gammaproteobacteria). Springer, New York, p 556

    Google Scholar 

  • Chen PL, Ko WC, Wu CJ (2012) Complexity of β-lactamases among clinical Aeromonas isolates and its clinical implications. J Microbiol Immunol Infect 45(6):398–403. doi:10.1016/j.jmii.2012.08.008

    Article  PubMed  Google Scholar 

  • Collins MD, Martínez-Murcia AJ, Cai J (1993) Aeromonas enteropelogenes and Aeromonas ichthiosmia are identical to Aeromonas trota and Aeromonas veronii, respectively, as revealed by small-subunit rRNA sequence analysis. Int J Syst Bacteriol 43:855–856

    Article  CAS  PubMed  Google Scholar 

  • Demarta A, Küpfer M, Riegel P, Harf-Monteil C, Tonolla M, Peduzzi R, Monera A, Saavedra MJ, Martínez-Murcia AJ (2008) Aeromonas tecta sp. nov., isolated from clinical and environmental sources. Syst Appl Microbiol 31:278–286. doi:10.1016/j.syapm.2008.04.005

    Article  CAS  PubMed  Google Scholar 

  • Donohue MJ, Smallwood AW, Pfaller S, Rodgers M, Shoemarker JA (2006) The development of a matrix-assisted laser desorption/ionization mass spectrometry-based method for the protein fingerprinting and identification of Aeromonas species using whole cells. J Microbiol Methods 65:380–389

    Article  CAS  PubMed  Google Scholar 

  • Donohue MJ, Best JM, Smallwood AW, Kostich M, Rodgers M, Shoemaker JA (2007) Differentiation of Aeromonas isolated from drinking water distribution systems using matrix-assisted laser desorption/ionization-mass spectrometry. Anal Chem 79(5):1939–1946

    Article  CAS  PubMed  Google Scholar 

  • Fenselau C, Demirev PA (2001) Characterization of intact microorganisms by MALDI mass spectrometry. Mass Spectrom Rev 20(4):157–171

    Article  CAS  PubMed  Google Scholar 

  • Figueras MJ, Alperi A, Beaz-Hidalgo R, Stackebrandt E, Brambilla E, Monera A, Martínez-Murcia AJ (2011) Aeromonas rivuli sp. nov., isolated from the upstream region of a karst water rivulet. Int J Syst Evol Microbiol 61:242–248. doi:10.1099/ijs. 0.016139-0

    Article  CAS  PubMed  Google Scholar 

  • Freiwald A, Sauer S (2009) Phylogenetic classification and identification of bacteria by mass spectrometry. Nat Protoc 4:732–742. doi:10.1038/nprot.2009.37

    Article  CAS  PubMed  Google Scholar 

  • Huys G, Denys R, Swings J (2002a) DNA–DNA reassociation and phenotypic data indicate synonymy between Aeromonas enteropelogenes Schubert et al. 1990 and Aeromonas trota Carnahan et al. 1991. Int J Syst Evol Microbiol 52:1969–1972

    Article  CAS  PubMed  Google Scholar 

  • Huys G, Kämpfer P, Albert MJ, Kühn I, Denys R, Swings J (2002b) Aeromonas hydrophila subsp. dhakensis subsp. nov., isolated from children with diarrhoea in Bangladesh, and extended description of Aeromonas hydrophila subsp. hydrophila (Chester 1901) Stainer 1943. Int J Syst Evol Microbiol 52:705–712

    Article  CAS  PubMed  Google Scholar 

  • Janda JM, Abbott SL (1998) Evolving concepts regarding the genus Aeromonas: an expanding panorama of species, disease presentations, and unanswered questions. Clin Infect Dis 27:332–344

    Article  CAS  PubMed  Google Scholar 

  • Janda JM, Abbott SL (2010) The genus Aeromonas: taxonomy, pathogenicity, and infection. Clin Microbiol Rev 23:35–73. doi:10.1128/CMR. 00039-09

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Lamy B, Kodjo A, Laurent F et al (2011) Identification of Aeromonas isolates by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Diagn Microbiol Infect Dis 71(1):1–5. doi:10.1016/j.diagmicrobio.2011.04.014

    Article  CAS  PubMed  Google Scholar 

  • Martínez-Murcia AJ, Benlloch S, Collins MD (1992) Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations. Int J Syst Bacteriol 42:412–421

    Article  PubMed  Google Scholar 

  • Martínez-Murcia AJ, Saavedra MJ, Mota VR, Maier T, Stackebrandt E, Cousin S (2008) Aeromonas aquariorum sp. nov., isolated from aquaria of ornamental fish. Int J Syst Evol Microbiol 58:1169–1175. doi:10.1099/ijs. 0.65352-0

    Article  PubMed  Google Scholar 

  • Martínez-Murcia AJ, Monera A, Alperi A, Figueras MJ, Saavedra MJ (2009) Phylogenetic evidence suggests that strains of Aeromonas hydrophila subsp. dhakensis belong to the species Aeromonas aquariorum sp. nov. Curr Microbiol 58(1):76–80. doi:10.1007/s00284-008-9278-6

    Article  PubMed  Google Scholar 

  • Martínez-Murcia AJ, Beaz-Hidalgo R, Svec P, Saavedra MJ, Figueras MJ, Sedlacek I (2013) Aeromonas cavernicola sp. nov., isolated from fresh water of a brook in a cavern. Curr Microbiol 66(2):197–204. doi:10.1007/s00284-012-0253-x

    Article  PubMed  Google Scholar 

  • Martino M, Fasolato L, Montemurro F, Novelli E, Cardazzo B (2014) Aeromonas spp.: ubiquitous or specialized bugs? Environ Microbiol 16(4):1005. doi:10.1111/1462-2920.12215

    Article  CAS  PubMed  Google Scholar 

  • Merino S, Rubires X, Knochel S, Tomas JM (1995) Emerging pathogens: Aeromonas spp. Int J Food Microbiol 28(2):157–168

    Article  CAS  PubMed  Google Scholar 

  • Miñana-Galbis D, Farfán M, Fusté MC, Lorén JG (2004) Genetic diversity and population structure of Aeromonas hydrophila, Aer. bestiarum, Aer. salmonicida and Aer. popoffii by multilocus enzyme electrophoresis (MLEE). Environ Microbiol 6(3):198–208

    Article  PubMed  Google Scholar 

  • Miñana-Galbis D, Urbizu-Serrano A, Farfan M, Fusté MC, Loren JG (2009) Phylogenetic analysis and identification of Aeromonas species based on sequencing of the cpn60 universal target. Int J Syst Evol Microbiol 59:1976–1983. doi:10.1099/ijs. 0.005413-0

    Article  PubMed  Google Scholar 

  • Miñana-Galbis D, Farfán M, Lorén JG, Fusté MC (2010) Proposal to assign Aeromonas diversa sp. nov. as a novel species designation for Aeromonas group 501. Syst Appl Microbiol 33(1):15–19. doi:10.1016/j.syapm.2009.11.002

    Article  PubMed  Google Scholar 

  • Miyake M, Iga K, Izumi C, Miyagawa A, Kobashi Y, Konishi T (2000) Rapidly progressive pneumonia due to A. hydrophila shortly after near-drowning. Intern Med 39:1128–1130

    Article  CAS  PubMed  Google Scholar 

  • Morandi A, Zhaxybayeva O, Gogarten JP, Gral J (2005) Evolutionary and diagnostic implications of intragenomic heterogeneity in the 16S rRNA gene in Aeromonas strains. J Bacteriol 187:6561–6564

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Saavedra MJ, Figueras MJ, Martinez-Murcia AJ (2006) Updated phylogeny of the genus Aeromonas. Int J Syst Evol Microbiol 56:2481–2487

    Article  CAS  PubMed  Google Scholar 

  • Sandrin TR, Goldstein JE, Schumaker S (2013) MALDI TOF MS profiling of bacteria at the strain level: a review. Mass Spectrom Rev 32:88–217. doi:10.1002/mas.21359

    Article  Google Scholar 

  • Šedo O, Sedláček I, Zdráhal Z (2011) Sample preparation methods for MALDI-MS profiling of bacteria. Mass Spectrom Rev 30(3):417–34. doi:10.1002/mas.20287

    Article  PubMed  Google Scholar 

  • Seng P, Rolain JM, Fournier PE, La Scola B, Drancourt M, Raoult D (2010) MALDI-TOF-mass spectrometry applications in clinical microbiology. Rev Future Microbiol 5(11):1733–54. doi:10.2217/fmb.10.127

    Article  CAS  Google Scholar 

  • Shin GW, You MJ, Cho HS, Yi SW, Lee CS (2013) Severe sepsis due to Aeromonas aquariorum in a patient with liver cirrhosis. Jpn J Infect Dis 66(6):519–522

    Article  PubMed  Google Scholar 

  • Stackebrandt E, Frederiksen W, Garrity GM et al (2002) Report of the Ad Hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52:1043–1047

    Article  CAS  PubMed  Google Scholar 

  • Trust TJ, Chipman DC (1979) Clinical involvement of Aeromonas hydrophila. Rev Can Med Assoc J 120(8):942–946

    CAS  Google Scholar 

  • Tsai MS, Kuo CY, Wang MC, Wu HC, Chien CC, Liu JW (2006) Clinical features and risk factors for mortality in Aeromonas bacteremic adults with hematologic malignancies. J Microbiol Immunol Infect 39(2):150–154

    PubMed  Google Scholar 

  • Urwin R, Maiden MC (2003) Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol 11:479–487

    Article  CAS  PubMed  Google Scholar 

  • Wu CJ, Tsai PJ, Chen PL, Wu IC, Lin YT, Chen YH, Wang LR, Ko WC (2012) Aeromonas aquariorum septicemia and enterocolitis in a cirrhotic patient. Diagn Microbiol Infect Dis 74(4):406–408. doi:10.1016/j.diagmicrobio.2012.08.005

    Article  PubMed  Google Scholar 

  • Yáñez MA, Catalan V, Apraiz D, Figueras MJ, Martinez-Murcia AJ (2003) Phylogenetic analysis of members of the genus Aeromonas based on gyrB gene sequences. Int J Syst Evol Microbiol 53:875–883

    Article  PubMed  Google Scholar 

Download references

Acknowledgments

This work was supported by project CEITEC—Central European Institute of Technology (CZ.1.05/1.1.00/02.0068)—and CEB—Center of Experimental Biomedicine (CZ.1.07/2.3.00/20.0183)—and funded by the European Regional Development Fund, by the Ministry of Agriculture of the Czech Republic (QI101A094 and MZE0002716202), and by Student Project Grant at Masaryk University (specific research, rector’s program) MUNI/A/0884/2013.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Andrea Vávrová.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Vávrová, A., Balážová, T., Sedláček, I. et al. Evaluation of the MALDI-TOF MS profiling for identification of newly described Aeromonas spp.. Folia Microbiol 60, 375–383 (2015). https://doi.org/10.1007/s12223-014-0369-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12223-014-0369-4

Keywords

Navigation