Molecular pathogenesis of multiple myeloma: basic and clinical updates
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- Chesi, M. & Bergsagel, P.L. Int J Hematol (2013) 97: 313. doi:10.1007/s12185-013-1291-2
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Multiple myeloma is divided into two distinct genetic subtypes based on chromosome content. Hyperdiploid myeloma is characterized by multiple trisomies of chromosomes 3, 5, 7, 9 11, 15, 19 and 21, and lacks recurrent immunoglobulin gene translocations. Non-hyperdiploid myeloma in contrast is characterized by chromosome translocations t(4;14), t(14;16), t(14;20), t(6;14) and t(11;14). A unifying event in the pathogenesis of multiple myeloma is the dysregulated expression of a cyclin D gene, either directly by juxtaposition to an immunoglobulin enhancer, as a result of ectopic expression of a MAF family transcription factor, or indirectly by as yet unidentified mechanisms. Secondary genetic events include rearrangements of MYC, activating mutations of NRAS, KRAS or BRAF, a promiscuous array of mutations that activate NFkB and deletions of 17p. Among the poor-risk genetic features are t(4;14), t(14;16), t(14;20), del 17p and gains of 1q. Available evidence supports the use of a risk-stratified approach to the treatment of patients with multiple myeloma, with the early and prolonged use of bortezomib particularly in patients with t(4;14) and del 17p.
KeywordsPathogenesis Multiple myeloma Genetics Prognosis Treatment
Multiple myeloma (MM) is a monoclonal tumor of antibody-secreting plasma cells (PC) in the bone marrow (BM) that is often diagnosed by the presence of a typical M-spike by serum protein electrophoresis (SPEP) or by free light chains in the urine. In its symptomatic phase is associated with significant end organ damage including lytic bone lesions, anemia, loss of kidney function, immunodeficiency, and amyloid deposits in various tissues . MM incidence is higher in blacks than whites, and in men, than women , for a total estimate of 22,350 new cases and 10,710 deaths in the United States in 2013 . Although MM continues to be considered an incurable disease, thanks to the recent therapeutic advances, the 5-year survival rate reported in the SEER database has increased from 28 % (1987–1989) to 43 % (2002–2008) . Notably, a subset of patients with cytogenetically defined low-risk MM, initially treated in 1999 were reported having a 10-year survival rate of 75 % , with presumably even better results possible for patients starting treatment today. MM cells are the malignant counterparts of post-germinal center (GC) long-lived PCs, characterized by strong BM dependence, somatic hypermutation (SHM) of immunoglobulin (Ig) genes, and isotype class switch resulting in the absence of IgM expression in all but 1 % of tumors . However, MM cells differ from healthy PCs because they retain the potential for a low rate of proliferation (1–3 % of cycling cells).
Multi-step clinical course of multiple myeloma
Virtually every case of MM is preceded by a pre-malignant PC tumor called monoclonal gammopathy of undetermined significance (MGUS) [6, 7] that, like MM, produces a typical M-spike (almost always non-IgM) by SPEP or free light chain in the urine. It has to be distinguished from a IgM secreting lymphoid MGUS, a precursor phase of chronic lymphocytic leukemia, lymphoplasmacytoma and Waldenstrom’s macroglobulinemia. PC MGUS is age dependent, is present in about 4 % of individuals over the age of 50 [8, 9], and can progress to MM at average rates of 1 % per year. MGUS is distinguished from MM by having a M-spike of <30 g/L, with no more than 10 % of BM mononuclear cells being tumor cells, and no end organ damage or other symptoms. Progression of MGUS to smoldering MM and symptomatic MM is associated with an expanding BM tumor mass and increasingly severe organ impairment or symptoms . Despite the recent advances in the understanding of the MM pathogenesis, it is still largely impossible to predict which MGUS patient will and which one will never progress to MM. Although MM cells are characterized by a strong dependence on the BM tumor microenvironment, at late stages of the disease the more aggressive tumor may sometimes extend to extramedullary locations, such as spleen, liver, and extracellular spaces. Extramedullary MM (EMM) can also present with a leukemic phase, that is classified as secondary or primary plasma cell leukemia (PCL), depending on whether or not a preceding intramedullary MM was recognized. Most of the available human MM cell lines (HMCLs) have been generated from EMM or PCL tumors [10, 11] and represent a renewable repository of the oncogenic events involved in initiation and progression of the most aggressive end-stage MM tumors.
Post-germinal center long-lived plasma cells are the normal counterpart of the malignant cell in multiple myeloma
During a secondary immune response, activated lymphocytes migrate into GCs were they undergo antigen selection by multiple rounds of somatic hypermutation (SHM) and IgH class switch recombination (CSR). Cells whose B cell receptor loses affinity for the antigen are counter-selected and undergo apoptosis, while positively selected cells are rescued from apoptosis by expression of BCL2 and differentiate into either memory cells or plasma blasts (PB) before homing to the BM as long-lived PC. Although pre-GC short-lived PCs can also be generated during primary immune response, the presence of somatic mutations in the immunoglobulin genes without further remodeling clearly indicates a post-GC origin for MM.
Primary IgH translocations are an early oncogenic event shared by MGUS and MM
Translocations involving the IgH locus (14q32) or one of the IgL loci (κ, 2p12 or λ, 22q11) are present in at least half of MM cases and are thought to result from errors during the physiological process of CSR or SHM since the breakpoints are usually located near or within IgH switch regions, but sometimes near VDJ sequences . It is presumed that these translocations represent primary—perhaps initiating—oncogenic events as normal B cells pass through GCs. In fact, although clonal heterogeneity has been identified in MM as in many other cancers, the primary chromosome translocations continue to mark the tumor clone throughout disease progression. As in other B cell tumors, these translocations result in dysregulated expression of an oncogene that is juxtaposed to the strong Ig enhancers. However, translocations involving an IgH switch region uniquely dissociate the intronic (Emu) from one or both 3′ IgH enhancers (3′E), so that two putative oncogenes can become dysregulated on the two derivative chromosomes. This is exemplified by the t(4;14) translocation that simultaneously dysregulate FGFR3 on der(14) and MMSET on der(4) in MM.
These IgH translocations are efficiently detected by fluorescent in situ hybridization (FISH) analyses. Large studies from several groups show that the prevalence of IgH translocations increases with disease stage: about 50 % in MGUS or SMM, 55–70 % for intramedullary MM, 85 % in PCL, and >90 % in HMCL [13, 14]. Limited studies indicate that IgL translocations are present in about 10 % of MGUS/SMM tumors, and about 15–20 % of intramedullary MM tumors and HMCL . Translocations involving an IgK locus are rare, occurring in only 1–2 % of MM tumors and HMCL .
Primary IgH translocations dysregulate three gene groups: CCND, MAF and FGFR3/MMSET
It is thought that CYCLIN D translocations only dysregulate expression of a CYCLIN D gene. By contrast MAF translocations dysregulate expression of a MAF transcription factor that causes increased expression of many genes, including CYCLIN D2 and adhesion molecules that are thought to enhance the ability of the tumor cell to interact with the BM microenvironment [15, 16]. The contributions of the two genes dysregulated by t(4;14) remain controversial. MMSET is a chromatin-remodeling factor that is over-expressed in all tumors with a t(4;14), whereas about 20 % of tumors lack der(14) and FGFR3 expression. The rare acquisition of FGFR3 activating mutations during progression confirms a role for FGFR3 in MM pathogenesis. Although an activated mutant FGFR3 can be oncogenic, it recently was shown that wild-type FGFR3 (as is found in most t[4; 14]) can contribute to B cell oncogenesis . It remains to be determined if FGFR3 is critical early in pathogenesis but becomes dispensable during progression of t(4;14) MM, especially in the presence of RAS-BRAF activating mutations that, like mutated FGFR3, also lead to constitutive phosphorylation of ERK1-2. Preclinical studies suggest that tyrosine kinase inhibitors are active only against t(4;14) HMCL with activating mutations of FGFR3, whereas anti-FGFR3 monoclonal antibodies that inhibit FGFR3 signaling but also elicit antibody-dependent cell-mediated cytotoxicity are active against HMCLs expressing wild-type FGFR3 [18, 19]. Definitive results about the clinical activity of FGFR3 targeted therapy have not been reported yet. Despite an apparently indispensable role in t(4;14) MM, it remains to be determined how MMSET contributes to MM pathogenesis. There are some clues. It is a histone methyltransferase for H3K36me2, and when over-expressed results in a global increase in H3K36me2 methylation, and a decrease in H3K27me3 methylation, which most likely is the cause of the many changes in gene expression observed in t(4;14) tumors [15, 20–22]. In addition, it recently has been determined that MMSET has a role in DNA repair. Following DNA damage MMSET is phosphorylated on Ser102 by ATM and is recruited to sites of double strand breaks (DSB) where it results in methylation of H4K20 that is required for recruitment of p53-binding protein (53BP1). 53BP1 is required for p53 accumulation, G2/M checkpoint arrest, and the intra-S-phase checkpoint in response to ionizing radiation. Approximately half of the translocation breakpoints in t(4;14) MM result in a truncated MMSET that lacks Ser102 and cannot be recruited to DSBs, resulting in a failure to recruit 53BP1 and a loss of the normal DNA damage response pathway. It is not known whether this biologic difference results in a different clinical outcome for t(4;14) MM patients with a truncated versus full-length MMSET . Importantly, loss of MMSET expression alters adhesion, suppresses growth, and results in apoptosis of HMCLs, suggesting that it is an attractive therapeutic target . MMSET has been shown to post-transcriptionally enhance the expression of MYC by repressing miR-126, which targets the 3′ untranslated region of MYC, inhibiting translation . MMSET has been found over-expressed in a subset of many different cancers, where its over-expression correlates with tumor aggressiveness and prognosis [25, 26]. It has been shown to be a required effector of EZH2, and in prostate cancer to mediate constitutive NF-kB activation, and, by activation of TWIST, epithelial to mesenchymal transition [25, 27, 28].
Multiple trisomies is an alternative pathogenetic pathway
Cyclin Ds are ectopically expressed throughout MM progression
Almost all cases of plasma cell neoplasm starting from the MGUS stage and independently on the chromosome content aberrantly express one or more of the CYCLIN D genes and it has been proposed that dysregulation of a CYCLIN D gene provides a unifying, early oncogenic event in MGUS and MM (Fig. 2). Remarkably though this is not associated with increased proliferation, as the PC labeling index in MGUS, like in normal PCs, remain virtually = 0. Yet the expression level of cyclin D1, cyclin D2 or cyclin D3 mRNA in MM and MGUS is distinctly higher than in normal PCs. This results from several mechanisms including a direct cis-dysregulation in MM tumors with a CYCLIN D gene translocation [i.e. t(11;14) t(6;14) or t(12;14)] or a trans-dysregulation in tumors with a translocation of MAF [t(14;16)], encoding a transcription factor that directly binds to the CYCLIN D2 promoter. Although MMSET/FGFR3 tumors express moderately high levels of CYCLIN D2, the cause of increased CYCLIN D2 expression remains unknown. The majority of HRD tumors express CYCLIN D1 bi-allelically, perhaps because they contain a trisomic chromosome 11, whereas most other tumors express increased levels of CYCLIN D2 by unknown mechanism. Only a few percent of MM tumors do not express any CYCLIN D gene, but have been shown to contain a high level of contamination with normal cells. Another fraction of cyclin D negative samples shows bi-allelic deletion of RB1, the cell cycle inhibitor directly targeted by CYCLIN D, therefore bypassing the need for CYCLIN D gene.
Molecular classification of MM
The patterns of spiked expression of genes deregulated by primary IgH translocations and the universal over-expression of CCNDs genes led to the translocations and cyclin D (TC) classification that includes eight groups: those with primary translocations (designated 4p16, 11q13, 6p21, MAF), those that over-expressed CCND1 and CCND2 either alone or in combination (D1, D1&D2, D2), and the rare cases that do not over-express any CCND genes (‘none’) . Greater than 95 % of tumors in the D1 group are HRD. In addition, most of the patients with HRD MM and trisomy 11 fall within the D1 and D1&D2 groups, while those without trisomy 11 fall within the D2 group, although a majority of the D2 group are NHRD. This classification system is derived from a supervised analysis of gene expression data based on the different mechanisms that dysregulate a CCND gene as an early and unifying event in pathogenesis.
An MM classification based on an unsupervised analysis of microarray gene expression profiling from the UAMS identified 7 tumor groups characterized by the co-expression of unique gene clusters . This classification was partially replicated in an independent unsupervised analysis of a combined HOVON-GMMG dataset that identified 10 tumor groups with considerable overlap with the UAMS groups . Interestingly, these clusters partially overlap with the subgroups of the TC classification corresponding to the different primary translocations and HRD. Importantly, however, they also highlight other secondary events that become dominant during MM progression that can occur independently in each subtype of MM: proliferation (PR), expression of NFkB target genes (NFkB), cancer-testis antigens (CTA), and the phosphatase PTP4A3/PRL3 (PRL3). In addition to insights into the molecular biology of the disease, these classifications are prognostically relevant because, together with other cytogenetic markers (i.e. 17p deletion) they help stratifying patients into high and low risk. The CD-1 and CD-2 groups represent subgroups of patients with t(11;14) and t(6;14), with the former characterized by argininosuccinate synthetase 1 expression, and the later by expression of B cell antigens (CD20, VPREB, CD79A). Interestingly they identify patients with markedly different clinical outcomes. Of all the molecular subgroups, CD-1 has the quickest onset and highest frequency of CR (90 %), whereas CD-2 has the slowest onset, and lowest frequency of CR (45 %), when treated with Total Therapy 3. However, after the MF, the CD-1 has the shortest CR duration (77 % at 2 years), whereas the CD-2 has the longest (100 % at 2 years) .
Secondary oncogenic events drive MGUS and MM progression
A plethora of mutations have been identified in MM patients, which can occur at different frequencies independently in the different disease groups and are thought to promote disease progression.
There is increased expression of c-MYC in most newly diagnosed MM tumors compared to MGUS tumors . Recently, it was shown that sporadic activation of a MYC transgene in GC B cells in an MGUS prone mouse strain led to the universal development of MM tumors [35, 36]. Hence, increased MYC expression seems to be responsible for progression from MGUS to MM. Complex translocations involving MYC (c-MYC ≫ N-MYC > L-MYC) appear to be secondary progression events that often do not involve Ig loci . They are rare or absent in MGUS, but occur in 15 % of newly diagnosed tumors, 50 % of advanced tumors, and 90 % of HMCLs [11, 38]. A recent report suggests that a small molecule inhibitor of BRD4 can inhibit MYC RNA expression in MM, with therapeutic effect .
Chromosome 13 deletion
A recent study concludes that chromosome 13 deletion can be an early event in MGUS (e.g., in MAF, MMSET tumors) or a progression event (e.g., in t(11;14) tumors) . The pathogenic effect of this chromosome deletion is unknown, though it is possible that haploinsufficiency of RB1 promotes tumorigenesis . A recent genome wide sequencing study identified mutations of DIS3, a gene of unknown function on 13q, in about 10 % of MM. Although only very few mutations have been reported to date, it has been suggested that DIS3 mutation occurs in parallel with deletions of RB1 , suggesting a possible dependence between these two events. Although del13 was initially reported to be an independent prognostic factor, it is now accepted only when detected by conventional cytogenetics in the more proliferative cells.
Activating mutations of RAS and BRAF
The prevalence of activating NRAS or KRAS mutations is about 15–18 % each in newly diagnosed and relapsed MM tumors [13, 42], but substantially higher in tumors that express CCND1 compared to tumors that express CCND2. For MGUS tumors, the prevalence of NRAS mutations is 7 %, but KRAS mutations have not been described . This is consistent with increasing evidence that NRAS and KRAS mutations have overlapping but non-identical effects , and also the hypothesis that KRAS mutations provide a molecular mark of the transition of MGUS to MM [45, 46]. MM tumors depend on the continued expression of activated but not wild-type RAS . Recently, BRAF mutations were described in 4 % of MM tumors, suggesting a possible role for BRAF inhibitors in these cases .
Activating mutations of NFkappaB pathway
Extrinsic ligands (APRIL and BAFF) produced by BM stromal cells provide critical survival signals to long-lived PCs by stimulating TACI, BCMA, and BAFF receptors to activate the NFKB pathways . Most MGUS and MM tumors highly express NFKB target genes, suggesting a continued role of extrinsic signaling in PC tumors [50, 51] and at least in part explaining the constant dependency of MM cells on the BM microenvironment. Activating mutations in positive regulators and inactivating mutations in negative regulators of the NFKB pathway have been identified in at least 20 % of untreated MM tumors and ~50 % of HMCLs, rendering the cells less dependent on ligand-mediated NFKB activation  and most likely contributing to extra-medullary spread of the disease. Interestingly, the NFKB negative regulator TRAF3 located on 14q32 is inactivated in >10 % MM tumors, suggesting that at least in the presence of RAS/BRAF compensating mutation there may be an advantage for t(4;14) MM to lose the der(14) containing FGFR3 in favor of activating the NFKB pathway. Small molecules that inhibit extrinsic signaling [including TACI.Fc, IKKβ, and NIK (MAP3K14)] are being developed as potential therapeutic agents [52, 53]. There also is some evidence suggesting that cells addicted to constitutive NFKB activation may be particularly sensitive to proteasome inhibition .
Chromosome 17p loss and abnormalities of TP53
Deletions that include the TP53 locus occur in ~10 % of untreated MM tumors, and the prevalence increases with disease stage [13, 54]. TP53 mutations were present in 37 % of untreated MM tumors with del17p, but not in patients without del17p . Even in the absence of TP53 mutations, del17p remains a strong independent negative predictor for survival of MM patients, although it remains to be determined if the poor prognosis is due to haploinsufficiency or to predisposition to complete inactivation of TP53 eventually occurring with tumor progression. Recently, decreased expression of microRNAs miR-199, -192, and -215 in MM was reported to increase MDM2, an inhibitor of TP53 , contributing to loss of p53 activity.
Gain of chromosome 1q and loss of chromosome 1p
These genomic events frequently occur together in MM, and each of them is associated with a poor prognosis [13, 57]. The relevant genes on 1q are unclear at this time although the anti-apoptotic gene MCL1 has been suggested as a potential driver of the adverse survival. By contrast, there are potential targets on two regions of 1p that are associated with a poor prognosis: CDKN2C (p18INK4c) at 1p32.3 and FAM46C at 1p12 [58, 59]. Homozygous deletion of the cell cycle regulator CDKN2C, which is present in about 30 % of HMCL and about 5 % of untreated MM tumors, is associated with increased proliferation and a poor prognosis, whereas monoallelic deletion is not. Mutations of FAM46C—often with hemizygous deletion—were identified in 3.4 and 13 % of MM tumors in two studies, and in 25 % of 16 HMCL, although the function of this gene is still unknown [48, 58].
Other pathogenic events
Secondary Ig translocations, including most IgK and IgL translocations and IgH translocations not involving one of the seven primary partners, can occur at all stages of disease, and with a similar frequency in HRD and NHRD tumors, but apart from MYC, few partner loci have been identified . Other genomic rearrangements are frequent, but only a few specific target genes have been identified [57, 60, 61]. Changes in DNA methylation are frequent, with one study suggesting that a marked increase in hypomethylation is associated with the MGUS to MM transition , whereas a second study suggests only a small increase in hypomethylation for MM compared to MGUS . Mutations in seven genes regulating RNA metabolism, protein translation and homeostasis were identified in 16 of 38 patients . In addition to previous studies implicating roles for MMSET and KDM6A (UTX), genomic sequencing studies found that other histone modifying enzymes are frequent targets of mutation, although the epigenetic consequences are unknown . Similarly, changes in microRNA expression at different stages have been identified, but more extensive studies are needed [56, 64].
High-risk MM is associated to intra-clonal tumor heterogeneity
Recent evidences suggest that tumor heterogeneity is prevalent in MM, as in many other cancers, and that different subclones are present within the tumor population, characterized by distinct genetic mutations that contributed independently to the tumor progression [41, 61, 65]. Recently a high level of intra-clonal tumor heterogeneity has been described in some patients with high-risk MM [41, 61, 65] associated in one case with alternating clonal dominance under therapeutic selective pressure, observations with important clinical implications. The findings suggest a competition between subclones for limited resources and raise the possibility that early, suboptimal treatment may eradicate the “good” drug-sensitive clone, making room for the “bad” drug-resistant clone to expand. They support the use of aggressive multi-drug combination approaches for high-risk disease with unstable genomes and clonal heterogeneity, and sequential one- or two-drug approaches for low-risk disease with stable genomes and lacking clonal heterogeneity.
Clinical implications of the molecular classification of multiple myeloma
Survival of high-risk genetic subgroups on randomized controlled clinical trials of thalidomide and bortezomib in untreated MM
Arm 1 (%)
Arm 2 (%)
TT2 v. TT3 
MRC-IX intensive 
MRC-IX non-intens 
MRC-IX maint 
In TT2 the OS advantage of thalidomide versus placebo appeared confined to the 23 % of patients with both GEP-defined low-risk disease and metaphase cytogenetic abnormalities . In contrast in the MRC-IX study the 44 % of patients with unfavorable cytogenetics [t(4;14), t(14;16), t(14;20), gain(1q21), del(1p32), del(17p)] randomized to thalidomide maintenance saw no prolongation of PFS, and the OS was significantly shorter than those randomized to placebo . In the IFM 99-02 trial, the patients with del13 randomized to thalidomide maintenance saw no prolongation of EFS, but the OS was not reported . In the non-intensive pathway of MRC-IX, CTDa vs MP, a trend to improved OS with thalidomide induction was noted only in the favorable cytogenetics group, but the OS for the unfavorable cytogenetic group was not reported . In the Spanish study of VTD vs VMP, the non-hyperdiploid [which includes the high-risk t(4;14), t(14;16) and t(14;20)] patients randomized to thalidomide induction had significantly shorter 3-year OS (53 vs 72 %, p = 0.02) . The HOVON-65/GMMG-HD4 trial randomized patients to one of two pathways: vincristine–adriamycin–dexamethasone induction, followed by high-dose melphalan and thalidomide maintenance versus bortezomib–doxorubicin–dexamethasone induction followed by high-dose melphalan and bortezomib maintenance. They noted a shorter 3-year OS for the patients randomized to the thalidomide arm with del13 (61 vs 81 %, p = 0.07), t(4;14) (44 vs 66 %, p = 0.37) and del17p (17 vs 69 %, p = 0.28) . There are no data regarding the OS of different cytogenetic subgroups randomized to lenalidomide vs placebo. In the IFM 2005 study both the del13 and del17p patients randomized to lenalidomide maintenance had a significant improvement in PFS, but only a very minimal effect was seen in the t(4;14) [78, 79]. In summary therefore it appears that the maximum benefit of thalidomide is seen in the good-risk patients, whereas no benefit and sometimes worse outcomes are seen with its use in poor-risk patients. Further studies are urgently required to define the utility and safety of IMiDs in the various molecular subtypes of MM.
The MF molecular subgroups, t(14;16) and t(14;20), have each individually been associated with a poor prognosis [33, 80], although not seen for the t(14;16) in one study . In addition del17p is universally associated with poor prognosis [57, 68]. Finally patients defined as high-risk by a GEP index of proliferation  or other GEP-defined risk scores [83, 84] (which all appear to discriminate prognosis equally in an independent dataset ) do poorly. Unlike the t(4;14), for these latter subgroups neither bortezomib nor any other intervention has been shown to offer a survival advantage, although the data are unfortunately very limited. These patients should be considered for clinical trials exploring innovative approaches.
Significant progress has been made is understanding the molecular pathogenesis and biology of MM. Oncogenic pathways can be activated through cell intrinsic or extrinsic mechanisms. Similar to other cancers, MM is characterized by multi-stage accumulation of genetic abnormalities deregulating different pathways. Much of this knowledge is already being utilized for diagnosis, prognosis and risk-stratification of patients. Importantly, from a clinical standpoint, this knowledge has led to development of novel therapeutic strategies, some of which are already in clinical use, and many others showing promise in pre-clinical and early clinical studies.