Skip to main content
SpringerLink
Log in

Molecular characterization of rainbow trout, Oncorhynchus mykiss (Walbaum, 1792) stocks in India

  • Online Resources
  • Published:
Journal of Genetics Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Figure 1
Figure 2
Figure 3

References

  • Agarwal S. C. 2006 History of Indian fishery. Daya Publishing House, New Delhi, India.

    Google Scholar 

  • Evanno G., Regnaut S. and Goudet J. 2005 Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14, 2611–2620.

    Article  CAS  PubMed  Google Scholar 

  • Excoffier L. and Lischer H. E. L. 2010 Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10, 564–567.

    Article  PubMed  Google Scholar 

  • Garza J. C. and Williamson E. G. 2001 Detection of reduction in population size using data from microsatellite loci. Mol. Ecol. 10, 305–318.

    Article  CAS  PubMed  Google Scholar 

  • Goudet J. 1995 FSTAT (version 1.2): a computer program to calculate F–statistics. J. Hered. 86, 485–486.

    Article  Google Scholar 

  • Gross R., Lulla P. and Paaver T. 2007 Genetic variability and differentiation of rainbow trout (Oncorhynchus mykiss) strains in Northern and Eastern Europe. Aquaculture 272, (suppl. 1), S139—S146.

    Google Scholar 

  • Kalinowski S. T., Taper M. L. and Marshall T. C. 2007 Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 16, 1099–1106.

    Article  PubMed  Google Scholar 

  • Lewis P. O. and Zaykin D. 2008 Genetic Data Analysis: computer program for the analysis of allelic data, version 1.1 (http://www.eeb.uconn.edu/people/plewis/software.php).

  • Narum S. R., Contor C., Talbot A. and Powell M. S. 2004 Genetic divergence of sympatric resident and anadromus forms of Oncorhynchus mykiss in the Walla Walla River, USA. J. Fish. Biol. 65, 417–488.

    Article  Google Scholar 

  • Nei M. 1978 Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89, 583–590.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Piry S., Luikart G. and Cornuet J. M. 1999 BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J. Hered. 90, 502–503.

    Article  Google Scholar 

  • Pritchard J. K., Stephens M. and Donnelly P. 2000 Inference of population structure using multilocus genotype data. Genetics 155, 945–959.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Rexroad I. C. E., Coleman R. L., Gustafson A. L., Hershberger W. K. and Killefer J. 2002 Development of rainbow trout microsatellite markers from repeat enriched libraries. Mar. Biotechnol. 3, 12–16.

    Article  Google Scholar 

  • Rousset F. 2008 GENEPOP’007: a complete re-implementation of the Genepop software for Windows and Linux. Mol. Ecol. Resour. 8, 103–106.

    Article  PubMed  Google Scholar 

  • Sambrook J. and Russell D. 2001 Molecular cloning: a laboratory manual, 3rd edition. Cold Spring Harbor Laboratory Press, New York, USA.

    Google Scholar 

  • Silverstein J. T., Rexroad C. E. and King T. L. 2004 Genetic variation measured by microsatellites among three strains of domesticated rainbow trout (Oncorhynchus mykiss, Walbaum). Aquac. Res. 35, 40–48.

    Article  CAS  Google Scholar 

  • Tamura K., Peterson D., Peterson N., Stecher G., Nei M. and Kumar S. 2011 MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731–2739.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Van-Oosterhout C., Hutchison W. F., Shipley P. and Wills D. P. M. 2004 Micro-Checker: Software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. 4, 535–538.

    Article  CAS  Google Scholar 

  • Ward R. D., Jorstad K. E. and Maguire G. B. 2003 Microsatellite diversity in rainbow trout (Oncorhynchus mykiss) introduced to Western Australia. Aquaculture 219, 169–179.

    Article  CAS  Google Scholar 

  • Yousefian M., Faramarz L., Hedayatifard M., Bahrekazemi M., Tagavi M. J., Irani M., et al. 2012 Microsatellite diversity in Rainbow trout (Oncorhynchus mykiss) stock of different origin. Middle East J. Sci. Res. 11, 1196–1201.

    Google Scholar 

Download references

Acknowledgements

The authors acknowledge Indian Council of Agricultural Research for extending financial support under ‘Flagship Program’. They are also indebted to Director of Fisheries, Government of Himachal Pradesh and Jammu & Kashmir and to Dr. Jeorge Ninan, Senior Scientist, CIFT, Kochi, for collection of live samples of rainbow trout.

Author information

Authors and Affiliations

  1. Molecular Genetics Laboratory, Directorate of Coldwater Fisheries Research, Bhimtal, 263 136, India

    ASHOKTARU BARAT, PRABHATI K. SAHOO, ROHIT KUMAR, JAVAID I. MIR, SHAHNAWAZ ALI, RABINDAR S. PATIYAL & ATUL K. SINGH

Authors
  1. ASHOKTARU BARAT
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. PRABHATI K. SAHOO
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. ROHIT KUMAR
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. JAVAID I. MIR
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. SHAHNAWAZ ALI
    View author publications

    You can also search for this author in PubMed Google Scholar

  6. RABINDAR S. PATIYAL
    View author publications

    You can also search for this author in PubMed Google Scholar

  7. ATUL K. SINGH
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to ASHOKTARU BARAT.

Additional information

[Barat A., Sahoo P. K., Kumar R., Mir J. I., Ali S., Patiyal R. S. and Singh A. K. 2015 Molecular characterization of rainbow trout, Oncorhynchus mykiss (Walbaum, 1972) stocks in India. J. Genet. 94, e13–e18. Online only: http://www.ias.ac.in/jgenet/OnlineResources/94/e13.pdf]

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

BARAT, A., SAHOO, P.K., KUMAR, R. et al. Molecular characterization of rainbow trout, Oncorhynchus mykiss (Walbaum, 1792) stocks in India. J Genet 94 (Suppl 2), 13–18 (2015). https://doi.org/10.1007/s12041-015-0483-3

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12041-015-0483-3

Keywords

Search

Navigation